EFV48447 (Trichinella spiralis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 EFV48447 T327416_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.546 0.893
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.514 0.804
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.506 0.804
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFV48447 Sox 122 177

Links

Other Sox family TFs
Other Trichinella spiralis TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004381 Aedes aegypti AAEL004381 I 0.534
AALB003439 Anopheles albimanus AALB003439 I 0.534
AALB009865 Anopheles albimanus AALB009865 I 0.460
AARA001217 Anopheles arabiensis AARA001217 I 0.534
AARA005393 Anopheles arabiensis AARA005393 I 0.460
AARA011914 Anopheles arabiensis AARA011914 I 0.422
AATE006542 Anopheles atroparvus AATE006542 N 0.422
AC186524.3_FG005 Zea mays AC186524.3_FG005 N 0.427
ACEP10859 Atta cephalotes ACEP10859 I 0.460
ACEP18843 Atta cephalotes ACEP18843 I 0.546
ACEP25270 Atta cephalotes ACEP25270 N 0.415
ACHR006446 Anopheles christyi ACHR006446 I 0.534
ACOM034662 Anopheles coluzzii ACOM034662 I 0.422
ACUA015009 Anopheles culicifacies ACUA015009 I 0.534
ACUA026266 Anopheles culicifacies ACUA026266 I 0.422
ACUA026638 Anopheles culicifacies ACUA026638 I 0.460
ACYPI004663 Acyrthosiphon pisum ACYPI004663 I 0.539
ADAC008993 Anopheles darlingi ADAC008993 I 0.534
ADIR003322 Anopheles dirus ADIR003322 I 0.534
ADIR005633 Anopheles dirus ADIR005633 I 0.460
AEPI005675 Anopheles epiroticus AEPI005675 I 0.534
AEPI010515 Anopheles epiroticus AEPI010515 I 0.460
AFAF009600 Anopheles farauti AFAF009600 I 0.534
AFUN006011 Anopheles funestus AFUN006011 I 0.534
AFUN010196 Anopheles funestus AFUN010196 I 0.460
AGAP013411 Anopheles gambiae AGAP013411 I 0.534
Alligator_sinensis_CCG005631.1 Alligator sinensis Alligator_sinensis_CCG005631.1 I 0.546
AMAM017484 Anopheles maculatus AMAM017484 I 0.534
AMEC008804 Anopheles melas AMEC008804 I 0.460
AMEC010127 Anopheles melas AMEC010127 I 0.534
AMEC016085 Anopheles melas AMEC016085 I 0.422
AMEC018835 Anopheles melas AMEC018835 I 0.479
AMEM005678 Anopheles merus AMEM005678 I 0.534
AMEM012787 Anopheles merus AMEM012787 I 0.564
AMIN001219 Anopheles minimus AMIN001219 I 0.422
AMIN003810 Anopheles minimus AMIN003810 I 0.534
AMIN009304 Anopheles minimus AMIN009304 I 0.460
ANCCAN_00149 Ancylostoma caninum ANCCAN_00149 I 0.515
ANCCEY_04123 Ancylostoma ceylanicum ANCCEY_04123 I 0.515
ANCDUO_05529 Ancylostoma duodenale ANCDUO_05529 I 0.515
AQUA004309 Anopheles quadriannulatus AQUA004309 I 0.422
AQUA008168 Anopheles quadriannulatus AQUA008168 I 0.534
ASIM_0000334601 Anisakis simplex ASIM_0000334601 I 0.515
ASTEI00261 Anopheles stephensi ASTEI00261 I 0.534
ASU_10300 Ascaris suum ASU_10300 I 0.515
bbx Danio rerio ENSDARG00000012699 I 0.539
BBX Homo sapiens ENSG00000114439 D 0.455
BGIBMGA010263 Bombyx mori BGIBMGA010263 I 0.534
BGLB001462 Biomphalaria glabrata BGLB001462 I 0.546
BGLB010904 Biomphalaria glabrata BGLB010904 I 0.422
Bm5934 Brugia malayi Bm5934 I 0.515
BN946_scf184985.g43 Trametes cinnabarina BN946_scf184985.g43 N 0.458
BTMF_0001637101 Brugia timori BTMF_0001637101 I 0.622
B_00914 Schistosoma haematobium B_00914 I 0.483
CADAORAG00001679 Aspergillus oryzae CADAORAG00001679 N 0.462
CapteG39126 Capitella teleta CapteG39126 I 0.546
CBG00068 Caenorhabditis briggsae CBG00068 I 0.484
CBN17413 Caenorhabditis brenneri CBN17413 I 0.514
Cflo_01544--XP_624175.2_APIME Camponotus floridanus Cflo_01544--XP_624175.2_APIME I 0.539
CGI_10003963 Crassostrea gigas CGI_10003963 I 0.468
CGI_10015746 Crassostrea gigas CGI_10015746 I 0.546
CIC Canis familiaris ENSCAFG00000004858 I 0.546
CIC Callithrix jacchus ENSCJAG00000012847 I 0.546
CIC Dasypus novemcinctus ENSDNOG00000047657 I 0.546
Cic Dipodomys ordii ENSDORG00000008822 I 0.546
CIC Equus caballus ENSECAG00000011342 I 0.546
CIC Echinops telfairi ENSETEG00000017271 I 0.546
CIC Homo sapiens ENSG00000079432 I 0.546
CIC Gorilla gorilla ENSGGOG00000000192 I 0.546
Cic Mus musculus ENSMUSG00000005442 D 0.546
CIC Otolemur garnettii ENSOGAG00000003964 I 0.546
CIC Procavia capensis ENSPCAG00000017001 I 0.546
CIC Pan troglodytes ENSPTRG00000011051 I 0.546
CIC Pteropus vampyrus ENSPVAG00000016806 I 0.546
Cic Rattus norvegicus ENSRNOG00000056118 I 0.546
CIC Sus scrofa ENSSSCG00000003030 I 0.546
CIC Tupaia belangeri ENSTBEG00000009044 I 0.546
CIC Tetraodon nigroviridis ENSTNIG00000003521 I 0.546
CIC Takifugu rubripes ENSTRUG00000007193 I 0.546
CIC Tursiops truncatus ENSTTRG00000013873 I 0.546
cic Drosophila melanogaster FBgn0262582 D 0.506
cic Xenopus tropicalis XB-GENE-6467430 I 0.546
cica Danio rerio ENSDARG00000071150 I 0.546
cica Oryzias latipes ENSORLG00000007091 I 0.546
cicb Gasterosteus aculeatus ENSGACG00000009452 I 0.546
cicb Oryzias latipes ENSORLG00000013259 I 0.546
CJA07419 Caenorhabditis japonica CJA07419 I 0.514
CLEC003268 Cimex lectularius CLEC003268 I 0.545
CLEC006959 Cimex lectularius CLEC006959 I 0.460
Cmyd_10001800 Chelonia mydas Cmyd_10001800 I 0.546
CPIJ012202 Culex quinquefasciatus CPIJ012202 I 0.534
CPIJ014016 Culex quinquefasciatus CPIJ014016 N 0.422
CPIJ014424 Culex quinquefasciatus CPIJ014424 I 0.416
CPIJ017659 Culex quinquefasciatus CPIJ017659 I 0.433
CpipJ_CPIJ012202 Culex pipiens CpipJ_CPIJ012202 I 0.534
CpipJ_CPIJ014016 Culex pipiens CpipJ_CPIJ014016 N 0.422
CpipJ_CPIJ014424 Culex pipiens CpipJ_CPIJ014424 I 0.416
CpipJ_CPIJ017659 Culex pipiens CpipJ_CPIJ017659 I 0.433
CRE24068 Caenorhabditis remanei CRE24068 I 0.546
csin104163 Clonorchis sinensis csin104163 I 0.453
CY34DRAFT_106474 Suillus luteus CY34DRAFT_106474 N 0.511
D915_09544 Fasciola hepatica D915_09544 I 0.460
D917_02434 Trichinella nativa D917_02434 I 0.565
D918_06270 Trichuris suis D918_06270 I 0.565
DAPPUDRAFT_37735 Daphnia pulex DAPPUDRAFT_37735 I 0.722
DDB_G0279661 Dictyostelium discoideum DDB_G0279661 N 0.462
ECPE_0001539401 Echinostoma caproni ECPE_0001539401 I 0.460
ENSAMXG00000007582 Astyanax mexicanus ENSAMXG00000007582 I 0.454
ENSAMXG00000014362 Astyanax mexicanus ENSAMXG00000014362 I 0.546
ENSAMXG00000018358 Astyanax mexicanus ENSAMXG00000018358 I 0.546
ENSBTAG00000019785 Bos taurus ENSBTAG00000019785 I 0.546
ENSCING00000007655 Ciona intestinalis ENSCING00000007655 I 0.510
ENSCPOG00000004391 Cavia porcellus ENSCPOG00000004391 I 0.546
ENSDORG00000003967 Dipodomys ordii ENSDORG00000003967 I 0.422
ENSDORG00000012440 Dipodomys ordii ENSDORG00000012440 I 0.422
ENSFALG00000002572 Ficedula albicollis ENSFALG00000002572 I 0.422
ENSFCAG00000012737 Felis catus ENSFCAG00000012737 I 0.546
ENSGMOG00000005167 Gadus morhua ENSGMOG00000005167 I 0.546
ENSGMOG00000014613 Gadus morhua ENSGMOG00000014613 N 0.434
ENSLACG00000002764 Latimeria chalumnae ENSLACG00000002764 I 0.546
ENSLOCG00000004648 Lepisosteus oculatus ENSLOCG00000004648 I 0.729
ENSLOCG00000005165 Lepisosteus oculatus ENSLOCG00000005165 I 0.427
ENSMEUG00000015665 Macropus eugenii ENSMEUG00000015665 I 0.461
ENSMEUG00000016625 Macropus eugenii ENSMEUG00000016625 I 0.546
ENSMICG00000015176 Microcebus murinus ENSMICG00000015176 I 0.546
ENSMLUG00000016650 Myotis lucifugus ENSMLUG00000016650 I 0.546
ENSMMUG00000012174 Macaca mulatta ENSMMUG00000012174 I 0.546
ENSMPUG00000007557 Mustela putorius furo ENSMPUG00000007557 I 0.546
ENSNLEG00000009528 Nomascus leucogenys ENSNLEG00000009528 I 0.460
ENSNLEG00000010614 Nomascus leucogenys ENSNLEG00000010614 I 0.546
ENSOARG00000007985 Ovis aries ENSOARG00000007985 I 0.546
ENSOARG00000009998 Ovis aries ENSOARG00000009998 I 0.460
ENSOCUG00000006458 Oryctolagus cuniculus ENSOCUG00000006458 I 0.546
ENSONIG00000004979 Oreochromis niloticus ENSONIG00000004979 I 0.546
ENSONIG00000013108 Oreochromis niloticus ENSONIG00000013108 I 0.546
ENSP00000160740 Macaca fascicularis ENSP00000160740 I 0.546
ENSP00000160740-D1 Bos grunniens ENSP00000160740-D1 I 0.546
ENSPANG00000009039 Papio anubis ENSPANG00000009039 I 0.546
ENSPFOG00000000116 Poecilia formosa ENSPFOG00000000116 I 0.546
ENSPFOG00000016231 Poecilia formosa ENSPFOG00000016231 I 0.546
ENSPMAG00000002631 Petromyzon marinus ENSPMAG00000002631 I 0.485
ENSPMAG00000010371 Petromyzon marinus ENSPMAG00000010371 I 0.422
ENSPPYG00000010041 Pongo abelii ENSPPYG00000010041 I 0.546
ENSPSIG00000009504 Pelodiscus sinensis ENSPSIG00000009504 I 0.422
ENSPTRG00000005969 Pan troglodytes ENSPTRG00000005969 I 0.466
ENSSSCG00000025539 Sus scrofa ENSSSCG00000025539 I 0.539
ENSSTOG00000000852 Ictidomys tridecemlineatus ENSSTOG00000000852 I 0.546
ENSVPAG00000000908 Vicugna pacos ENSVPAG00000000908 I 0.422
estExt_fgenesh1_pg.C_90036 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_90036 N 0.477
EVEC_0000011601 Enterobius vermicularis EVEC_0000011601 I 0.494
fgenesh1_pg.scaffold_35000054 Monosiga brevicollis fgenesh1_pg.scaffold_35000054 I 0.438
GA30228 Drosophila pseudoobscura FBgn0263363 I 0.506
GB43462 Apis mellifera GB43462 I 0.546
GD19345 Drosophila simulans FBgn0190847 I 0.506
GE25659 Drosophila yakuba FBgn0242721 I 0.506
gei-3 Caenorhabditis elegans WBGene00001560 D 0.514
GF17645 Drosophila ananassae FBgn0094663 I 0.506
Gfo_R009506 Geospiza fortis Gfo_R009506 I 0.422
GG23823 Drosophila erecta FBgn0115962 I 0.506
GH23191 Drosophila grimshawi FBgn0130648 N 0.423
GH23608 Drosophila grimshawi FBgn0131065 I 0.506
GI22721 Drosophila mojavensis FBgn0145448 I 0.506
GJ23448 Drosophila virilis FBgn0210547 I 0.506
GK10919 Drosophila willistoni FBgn0212930 I 0.506
GL12097 Drosophila persimilis FBgn0149705 I 0.506
GL20955 Drosophila persimilis FBgn0158550 I 0.483
GLOINDRAFT_28614 Rhizophagus irregularis GLOINDRAFT_28614 N 0.426
GM23104 Drosophila sechellia FBgn0177972 I 0.506
Gorai.007G078500 Gossypium raimondii Gorai.007G078500 N 0.425
GPUH_0001970101 Gongylonema pulchrum GPUH_0001970101 I 0.446
gw.448.64.1 Branchiostoma floridae gw.448.64.1 I 0.546
gw.46.292.1 Branchiostoma floridae gw.46.292.1 I 0.546
Hba_18941 Heterorhabditis bacteriophora Hba_18941 I 0.521
HBP1 Homo sapiens ENSG00000105856 D 0.417
HelroG148142 Helobdella robusta HelroG148142 I 0.690
HelroG148167 Helobdella robusta HelroG148167 I 0.608
HelroG148277 Helobdella robusta HelroG148277 N 0.460
HHAL000065-PA Halyomorpha halys HHAL000065-PA I 0.546
Hsal_04828--XP_001122993.1_APIME Harpegnathos saltator Hsal_04828--XP_001122993.1_APIME I 0.422
Hsal_08911--XP_624175.2_APIME Harpegnathos saltator Hsal_08911--XP_624175.2_APIME I 0.546
ISCW009925 Ixodes scapularis ISCW009925 I 0.422
ISCW021979 Ixodes scapularis ISCW021979 I 0.433
KGM_16941 Danaus plexippus KGM_16941 I 0.534
L596_g5739 Steinernema carpocapsae L596_g5739 I 0.515
L798_02392 Zootermopsis nevadensis L798_02392 I 0.416
L798_04020 Zootermopsis nevadensis L798_04020 N 0.447
L798_08623 Zootermopsis nevadensis L798_08623 I 0.546
L798_09303 Zootermopsis nevadensis L798_09303 I 0.474
L798_09360 Zootermopsis nevadensis L798_09360 N 0.447
L798_12045 Zootermopsis nevadensis L798_12045 I 0.433
L889_g11174 Steinernema feltiae L889_g11174 I 0.515
L892_g3879 Steinernema scapterisci L892_g3879 I 0.515
L893_g26751 Steinernema glaseri L893_g26751 I 0.515
L898_g3197 Steinernema monticolum L898_g3197 I 0.492
L898_g8837 Steinernema monticolum L898_g8837 I 0.515
LCUP009387 Lucilia cuprina LCUP009387 I 0.506
LDEC018997 Leptinotarsa decemlineata LDEC018997 I 0.477
LLOJ007756 Lutzomyia longipalpis LLOJ007756 I 0.541
LOAG_17202 Loa loa LOAG_17202 I 0.515
LotgiG100217 Lottia gigantea LotgiG100217 I 0.649
LotgiG88815 Lottia gigantea LotgiG88815 I 0.422
M408DRAFT_52405 Serendipita vermifera M408DRAFT_52405 N 0.421
MCINX015089 Melitaea cinxia MCINX015089 I 0.534
MDOA004531 Musca domestica MDOA004531 I 0.506
MESCA009852 Megaselia scalaris MESCA009852 I 0.460
ML040423a Mnemiopsis leidyi ML040423a I 0.433
ML23337a Mnemiopsis leidyi ML23337a N 0.422
Myotis_brandtii_Cic_10007129 Myotis brandtii Myotis_brandtii_Cic_10007129 I 0.546
nAv.1.0.1.g00032 Acanthocheilonema viteae nAv.1.0.1.g00032 I 0.519
nDi.2.2.2.g01012 Dirofilaria immitis nDi.2.2.2.g01012 I 0.515
nDi.2.2.2.g10379 Dirofilaria immitis nDi.2.2.2.g10379 I 0.460
NECAME_00080 Necator americanus NECAME_00080 I 0.691
NEMVEDRAFT_v1g120503 Nematostella vectensis NEMVEDRAFT_v1g120503 I 0.430
NEMVEDRAFT_v1g122926 Nematostella vectensis NEMVEDRAFT_v1g122926 I 0.690
nLs.2.1.2.g07996 Litomosoides sigmodontis nLs.2.1.2.g07996 I 0.515
nLs.2.1.2.g10155 Litomosoides sigmodontis nLs.2.1.2.g10155 I 0.460
nOo.2.0.1.g00287 Onchocerca ochengi nOo.2.0.1.g00287 I 0.515
NV10910 Nasonia vitripennis NV10910 I 0.546
Ocbimv22001036m.g Octopus bimaculoides Ocbimv22001036m.g I 0.475
Ocbimv22037932m.g Octopus bimaculoides Ocbimv22037932m.g I 0.534
OESDEN_00065 Oesophagostomum dentatum OESDEN_00065 I 0.515
OFLC_0001331401 Onchocerca flexuosa OFLC_0001331401 I 0.515
Ogr10275 Ophisaurus gracilis Ogr10275 I 0.546
PHUM079880 Pediculus humanus PHUM079880 I 0.546
PHUM605170 Pediculus humanus PHUM605170 I 0.440
PPAI009257 Phlebotomus papatasi PPAI009257 N 0.422
PTRK_0000169700 Parastrongyloides trichosuri PTRK_0000169700 I 0.467
Pvit_02876 Pogona vitticeps Pvit_02876 I 0.546
RO3G_05566 Rhizopus oryzae RO3G_05566 N 0.460
RPRC001090 Rhodnius prolixus RPRC001090 I 0.546
RPRC012780 Rhodnius prolixus RPRC012780 I 0.422
RPRC014334 Rhodnius prolixus RPRC014334 I 0.460
RSKR_0000077800 Rhabditophanes kr3021 RSKR_0000077800 I 0.467
Sakowv30042695m.g Saccoglossus kowalevskii Sakowv30042695m.g I 0.546
SBAD_0000026401 Soboliphyme baturini SBAD_0000026401 I 0.558
scaffold4-EXSNAP2012.129 Pristionchus exspectatus scaffold4-EXSNAP2012.129 I 0.521
SCUD_0001673101 Schistosoma curassoni SCUD_0001673101 I 0.483
SINV19744 Solenopsis invicta SINV19744 I 0.460
Sjc_0093980 Schistosoma japonicum Sjc_0093980 I 0.483
SMAR009315 Strigamia maritima SMAR009315 I 0.539
Smp_142600 Schistosoma mansoni Smp_142600 I 0.483
Smp_148110 Schistosoma mansoni Smp_148110 I 0.446
SMU15002098 Schmidtea mediterranea SMU15002098 I 0.502
SMUV_0001072601 Syphacia muris SMUV_0001072601 I 0.494
SNAPOd2T00000335001 Oikopleura dioica SNAPOd2T00000335001 I 0.428
SOX1 Anolis carolinensis ENSACAG00000006346 I 0.460
SOX10 Erinaceus europaeus ENSEEUG00000011263 I 0.422
SOX10 Meleagris gallopavo ENSMGAG00000012508 I 0.422
SOX10 Ochotona princeps ENSOPRG00000013575 I 0.422
SOX10 Procavia capensis ENSPCAG00000005913 I 0.422
SOX3 Pteropus vampyrus ENSPVAG00000003166 I 0.460
SOX9 Pteropus vampyrus ENSPVAG00000010505 I 0.422
sox9b Danio rerio ENSDARG00000043923 I 0.422
SPAL_0001296500 Strongyloides papillosus SPAL_0001296500 I 0.467
SPER_0000213401 Spirometra erinaceieuropaei SPER_0000213401 N 0.462
SPU_025292 Strongylocentrotus purpuratus SPU_025292 I 0.539
SS1G_05340 Sclerotinia sclerotiorum SS1G_05340 N 0.522
SSTP_0000494800 Strongyloides stercoralis SSTP_0000494800 I 0.467
SVE_0052600 Strongyloides venezuelensis SVE_0052600 I 0.467
SVUK_0000932601 Strongylus vulgaris SVUK_0000932601 I 0.519
T265_01499 Opisthorchis viverrini T265_01499 I 0.453
TC003791 Tribolium castaneum TC003791 I 0.422
TC004697 Tribolium castaneum TC004697 I 0.546
TCLT_0000608401 Thelazia callipaeda TCLT_0000608401 I 0.515
TELCIR_02356 Teladorsagia circumcincta TELCIR_02356 I 0.596
tetur21g00740 Tetranychus urticae tetur21g00740 I 0.539
THITE_2010224 Thielavia terrestris THITE_2010224 N 0.483
TMUE_s0223001200 Trichuris muris TMUE_s0223001200 I 0.565
TPHA_0C04350 Tetrapisispora phaffii TPHA_0C04350 N 0.525
TTRE_0000098801 Trichuris trichiura TTRE_0000098801 I 0.565
WBGene00241539 Onchocerca volvulus WBGene00241539 I 0.515
WUBG_04884 Wuchereria bancrofti WUBG_04884 I 0.515
WUBG_09252 Wuchereria bancrofti WUBG_09252 I 0.467
XP_002160522.1 Hydra magnipapillata XP_002160522.1 I 0.440
XP_002935939 Xenopus tropicalis XP_002935939 I 0.422
YQE_03282 Dendroctonus ponderosae YQE_03282 I 0.546