FIBRA_06688 (Fibroporia radiculosa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 FIBRA_06688 T329896_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sox17
M00199_2.00 		Mus musculus
NNNNWSAAT
ATTSWNNNN		 PBM
Badis et al.(2009)
Sox17_2837 		0.430 0.362
Sox17
M03533_2.00 		Mus musculus
AACAATWDCATTGTT
AACAATGHWATTGTT		 SELEX
Jolma et al.(2013)
Sox17_1 		0.430 0.362
Sox17
M03534_2.00 		Mus musculus
ATGAATWNCATTCAT
ATGAATGNWATTCAT		 SELEX
Jolma et al.(2013)
Sox17_2 		0.430 0.362
SOX17
M05896_2.00 		Homo sapiens
DRACAATRVN
NBYATTGTYH		 SMiLE-seq
Isakova et al.(2017)
SOX17 		0.430 0.362
Sox17
M02718_2.00 		Mus musculus
SACAATRNN
NNYATTGTS		 SELEX
Mathelier et al.(2014)
MA0078.1 		0.430 0.362
Sox17
M08040_2.00 		Mus musculus
RVACAAWRRVN
NBYYWTTGTBY		 ChIP-seq
Chen et al.(2011)
GSE19026_Sox17_XENcells 		0.430 0.362
SOX17
M09396_2.00 		Homo sapiens
BCCATTKTNBN
NVNAMAATGGV		 Misc
Kulakovskiy et al.(2013)
SOX17_HUMAN.H11MO.0.C 		0.430 0.362
SOX17
M11323_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX17_01 		0.430 0.362
SOX17
M11324_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX17_Q2 		0.430 0.362
SOX18
M03529_2.00 		Homo sapiens
AACAATDNCATTGTT
AACAATGNHATTGTT		 SELEX
Jolma et al.(2013)
SOX18_1 		0.423 0.377
SOX18
M03530_2.00 		Homo sapiens
ATCAATWDCATTGAT
ATCAATGHWATTGAT		 SELEX
Jolma et al.(2013)
SOX18_2 		0.423 0.377
SOX18
M03531_2.00 		Homo sapiens
ATGAATWYCATTCAT
ATGAATGRWATTCAT		 SELEX
Jolma et al.(2013)
SOX18_3 		0.423 0.377
SOX18
M05791_2.00 		Homo sapiens
VACRAYGV
BCRTYGTB		 SELEX
Yin et al.(2017)
SOX18_eDBD_HT-SELEX 		0.423 0.377
SOX18
M11334_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX18_Q5_01 		0.423 0.377
SOX18
M11335_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX18_Q5 		0.423 0.377
SOX18
M05792_2.00 		Homo sapiens
BYATTGTN
NACAATRV		 SELEX
Yin et al.(2017)
SOX18_eDBD_Methyl-HT-SELEX 		0.423 0.377
Sox18
M00204_2.00 		Mus musculus
NNNWBAAT
ATTVWNNN		 PBM
Badis et al.(2009)
Sox18_3506 		0.423 0.362
Sox7
M00209_2.00 		Mus musculus
NNNWBAAT
ATTVWNNN		 PBM
Badis et al.(2009)
Sox7_3460 		0.420 0.348
SOX7
M03516_2.00 		Homo sapiens
AACAATRDNHAKTGTT
AACAMTDNHYATTGTT		 SELEX
Jolma et al.(2013)
SOX7_1 		0.420 0.348
SOX7
M03517_2.00 		Homo sapiens
DAACAATKDYAKTGTTN
NAACAMTRHMATTGTTH		 SELEX
Jolma et al.(2013)
SOX7_2 		0.420 0.348
SOX7
M03518_2.00 		Homo sapiens
NATGAATKDCAKTCATN
NATGAMTGHMATTCATN		 SELEX
Jolma et al.(2013)
SOX7_3 		0.420 0.348
SOX7
M05787_2.00 		Homo sapiens
ACAATDNHATTGT
ACAATDNHATTGT		 SELEX
Yin et al.(2017)
SOX7_eDBD_HT-SELEX 		0.420 0.348
SOX7
M11325_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX7_Q2 		0.420 0.348
SOX7
M05788_2.00 		Homo sapiens
ACAATDNHATTGT
ACAATDNHATTGT		 SELEX
Yin et al.(2017)
SOX7_eDBD_Methyl-HT-SELEX 		0.420 0.348
Sox21
M00208_2.00 		Mus musculus
WTTVWNNNN
NNNNWBAAW		 PBM
Badis et al.(2009)
Sox21_3417 		0.419 0.391
SOX21
M03497_2.00 		Homo sapiens
AACAATKKYAKTGTT
AACAMTRMMATTGTT		 SELEX
Jolma et al.(2013)
SOX21_1 		0.419 0.391
SOX21
M03498_2.00 		Homo sapiens
AACAATRKDYAKTGTT
AACAMTRHMYATTGTT		 SELEX
Jolma et al.(2013)
SOX21_2 		0.419 0.391
SOX21
M03499_2.00 		Homo sapiens
TCAATGDYAKTGA
TCAMTRHCATTGA		 SELEX
Jolma et al.(2013)
SOX21_3 		0.419 0.391
SOX21
M03500_2.00 		Homo sapiens
TGAATGKYAKTCA
TGAMTRMCATTCA		 SELEX
Jolma et al.(2013)
SOX21_4 		0.419 0.391
Sox21b
M03983_2.00 		Drosophila melanogaster
NAACAMTWNCAKTGTTB
VAACAMTGNWAKTGTTN		 SELEX
Nitta et al.(2015)
Sox21b_1 		0.418 0.391
Sox21a
M03978_2.00 		Drosophila melanogaster
NMACAMTAVCATTGTKN
NMACAATGBTAKTGTKN		 SELEX
Nitta et al.(2015)
Sox21a_1 		0.418 0.377
Sox21a
M03979_2.00 		Drosophila melanogaster
NNACAMTANCATTGTYH
DRACAATGNTAKTGTNN		 SELEX
Nitta et al.(2015)
Sox21a_2 		0.418 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CCM04507 Sox 99 170

Links

Other Sox family TFs
Other Fibroporia radiculosa TFs

496 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATCSP3 Arabidopsis lyrata fgenesh2_kg.3__3388__AT2G17870.1 N
Bo1g006000 Brassica oleracea Bo1g006000 N
Bo7g012920 Brassica oleracea Bo7g012920 N
Bo7g117730 Brassica oleracea Bo7g117730 N
Bostr.18351s0255 Boechera stricta Bostr.18351s0255 N
Bostr.7867s1467 Boechera stricta Bostr.7867s1467 N
Bra002099 Brassica rapa Bra002099 N
Bra011655 Brassica rapa Bra011655 N
Bra017742 Brassica rapa Bra017742 N
Cagra.2236s0009 Capsella grandiflora Cagra.2236s0009 N
Carubv10006250m.g Capsella rubella Carubv10006250m.g N
Carubv10015336m.g Capsella rubella Carubv10015336m.g N
Cla016088 Citrullus lanatus Cla016088 N
CSDP1 Arabidopsis lyrata fgenesh2_kg.7__465__AT4G36020.1 N
CSP1 Arabidopsis thaliana AT4G36020 N
CSP3 Arabidopsis thaliana AT2G17870 N
Cucsa.381750 Cucumis sativus Cucsa.381750 N
evm.TU.supercontig_6.261 Carica papaya evm.TU.supercontig_6.261 N
GLYMA11G11290 Glycine max GLYMA11G11290 N
MDP0000121628 Malus domestica MDP0000121628 N
MDP0000198079 Malus domestica MDP0000198079 N
MDP0000632148 Malus domestica MDP0000632148 N
Pm026767 Prunus mume Pm026767 N
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N
PRUPE_ppa010531mg Prunus persica PRUPE_ppa010531mg N
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N
Thhalv10022795m.g Eutrema salsugineum Thhalv10022795m.g N
Thhalv10026001m.g Eutrema salsugineum Thhalv10026001m.g N
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N