Bostr.28625s0206 (Boechera stricta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Bostr.28625s0206 T344719_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.974 0.686
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.972 0.679
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.956 0.504
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.956 0.504
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.956 0.504
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.939 0.460
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.893 0.380
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.884 0.394
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.880 0.380
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.869 0.343
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.857 0.336
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.856 0.321
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.840 0.350
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.840 0.350
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.28625s0206.1.p TCP 45 246

Links

Other TCP family TFs
Other Boechera stricta TFs

418 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBG01395 Caenorhabditis briggsae CBG01395 N 0.000
CBG03687 Caenorhabditis briggsae CBG03687 I 0.000
CBG03688 Caenorhabditis briggsae CBG03688 I 0.000
CBG12152 Caenorhabditis briggsae CBG12152 I 0.000
CBG16375 Caenorhabditis briggsae CBG16375 I 0.000
CBG20699 Caenorhabditis briggsae CBG20699 I 0.000
CBN03440 Caenorhabditis brenneri CBN03440 I 0.000
CBN03769 Caenorhabditis brenneri CBN03769 I 0.000
CBN04619 Caenorhabditis brenneri CBN04619 I 0.000
CBN16902 Caenorhabditis brenneri CBN16902 I 0.000
CJA04414 Caenorhabditis japonica CJA04414 I 0.000
CJA07390 Caenorhabditis japonica CJA07390 I 0.000
CJA10576 Caenorhabditis japonica CJA10576 I 0.000
CRE07801 Caenorhabditis remanei CRE07801 I 0.000
CRE17310 Caenorhabditis remanei CRE17310 I 0.000
CRE17311 Caenorhabditis remanei CRE17311 N 0.000
CRE17354 Caenorhabditis remanei CRE17354 I 0.000
CRE17355 Caenorhabditis remanei CRE17355 I 0.000
CRE18529 Caenorhabditis remanei CRE18529 I 0.000
CRE27174 Caenorhabditis remanei CRE27174 I 0.000
CRE27659 Caenorhabditis remanei CRE27659 I 0.000
EVEC_0001266201 Enterobius vermicularis EVEC_0001266201 I 0.000
L596_g27786 Steinernema carpocapsae L596_g27786 I 0.000
L596_g9106 Steinernema carpocapsae L596_g9106 I 0.000
L889_g9698 Steinernema feltiae L889_g9698 I 0.000
L889_g987 Steinernema feltiae L889_g987 I 0.000
L892_g10708 Steinernema scapterisci L892_g10708 I 0.000
L892_g8140 Steinernema scapterisci L892_g8140 I 0.000
L892_g8144 Steinernema scapterisci L892_g8144 I 0.000
L892_g8145 Steinernema scapterisci L892_g8145 I 0.000
L893_g4569 Steinernema glaseri L893_g4569 I 0.000
L893_g9517 Steinernema glaseri L893_g9517 I 0.000
L898_g10723 Steinernema monticolum L898_g10723 I 0.000
L898_g28806 Steinernema monticolum L898_g28806 I 0.000
nhr-109 Caenorhabditis elegans WBGene00003699 I 0.000
nhr-12 Caenorhabditis elegans WBGene00003611 I 0.000
nhr-16 Caenorhabditis elegans WBGene00003615 I 0.000
nhr-273 Caenorhabditis elegans WBGene00020460 I 0.000
nhr-28 Caenorhabditis elegans WBGene00003624 I 0.000
nhr-70 Caenorhabditis elegans WBGene00003660 D 0.000
nhr-86 Caenorhabditis elegans WBGene00003676 D 0.000
PPA08785 Pristionchus pacificus PPA08785 I 0.000
PPA10478 Pristionchus pacificus PPA10478 I 0.000
PPA29361 Pristionchus pacificus PPA29361 I 0.000
scaffold1235-EXSNAP2012.2 Pristionchus exspectatus scaffold1235-EXSNAP2012.2 I 0.000
scaffold183-EXSNAP2012.18 Pristionchus exspectatus scaffold183-EXSNAP2012.18 I 0.000
scaffold260-EXSNAP2012.15 Pristionchus exspectatus scaffold260-EXSNAP2012.15 I 0.000
SMUV_0000801801 Syphacia muris SMUV_0000801801 I 0.000
SMUV_0000886001 Syphacia muris SMUV_0000886001 I 0.000