gw1.20.00.89.1 (Ostreococcus tauri)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 gw1.20.00.89.1 T346209_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gw1.20.00.89.1
M02535_2.00		 Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.704
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.704
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.704
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.704
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.676
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.676
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.662
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.620
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.620
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.620
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.620
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.606
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.606
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.606
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.606
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.606
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.606
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.592
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.592
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.592
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.592
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.592
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.563
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.563
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.563
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.521
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.507
For this family, TFs with SR scores > 0.660 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02535_2.00 TCR/CxC 1 36
M02535_2.00 TCR/CxC 76 111

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.20.00.89.1 TCR/CxC 1 36
gw1.20.00.89.1 TCR/CxC 76 111

Links

Other TCR/CxC family TFs
Other Ostreococcus tauri TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00018p00071850 Amborella trichopoda AMTR_s00018p00071850 I
ANAC001 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000119 I
anac067 Arabidopsis thaliana AT4G01520 I
anac069 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002854 I
BGIOSGA022116 Oryza indica BGIOSGA022116 N
BGIOSGA027623 Oryza indica BGIOSGA027623 I
Bo00853s060 Brassica oleracea Bo00853s060 I
Bo5g002810 Brassica oleracea Bo5g002810 I
Bo5g002850 Brassica oleracea Bo5g002850 I
Bo5g002860 Brassica oleracea Bo5g002860 N
Bo9g004070 Brassica oleracea Bo9g004070 I
Bo9g004110 Brassica oleracea Bo9g004110 I
Bostr.25375s0002 Boechera stricta Bostr.25375s0002 I
Bostr.4825s0023 Boechera stricta Bostr.4825s0023 I
Bostr.5325s0008 Boechera stricta Bostr.5325s0008 I
Bostr.5325s0009 Boechera stricta Bostr.5325s0009 I
Bostr.5325s0018 Boechera stricta Bostr.5325s0018 I
Bostr.5325s0019 Boechera stricta Bostr.5325s0019 I
Bra008553 Brassica rapa Bra008553 I
Bra027596 Brassica rapa Bra027596 I
Bra033296 Brassica rapa Bra033296 I
Bra036328 Brassica rapa Bra036328 I
BRADI3G16480 Brachypodium distachyon BRADI3G16480 I
Cagra.1968s0045 Capsella grandiflora Cagra.1968s0045 I
Carubv10003260m.g Capsella rubella Carubv10003260m.g I
Carubv10009049m.g Capsella rubella Carubv10009049m.g I
Carubv10009451m.g Capsella rubella Carubv10009451m.g I
Ca_04069 Cicer arietinum Ca_04069 I
Ca_20988 Cicer arietinum Ca_20988 I
Ca_27204 Cicer arietinum Ca_27204 I
chr1.LjT41E18.160.nc Lotus japonicus chr1.LjT41E18.160.nc I
Eucgr.I02571 Eucalyptus grandis Eucgr.I02571 N
Eucgr.J00531 Eucalyptus grandis Eucgr.J00531 I
evm.TU.supercontig_3.170 Carica papaya evm.TU.supercontig_3.170 N
F775_30082 Aegilops tauschii F775_30082 I
gene08448-v1.0-hybrid Fragaria vesca gene08448-v1.0-hybrid I
gene23394-v1.0-hybrid Fragaria vesca gene23394-v1.0-hybrid N
GLYMA14G36840 Glycine max GLYMA14G36840 I
Gorai.004G125900 Gossypium raimondii Gorai.004G125900 I
Gorai.006G203800 Gossypium raimondii Gorai.006G203800 I
Gorai.007G017500 Gossypium raimondii Gorai.007G017500 I
GRMZM2G003715 Zea mays GRMZM2G003715 I
GRMZM2G163914 Zea mays GRMZM2G163914 N
GRMZM2G459156 Zea mays GRMZM2G459156 N
GSMUA_Achr11G07800_001 Musa acuminata GSMUA_Achr11G07800_001 N
GSMUA_Achr1G03560_001 Musa acuminata GSMUA_Achr1G03560_001 I
GSMUA_Achr2G11810_001 Musa acuminata GSMUA_Achr2G11810_001 I
GSMUA_Achr3G00330_001 Musa acuminata GSMUA_Achr3G00330_001 I
GSMUA_Achr4G29170_001 Musa acuminata GSMUA_Achr4G29170_001 I
GSMUA_AchrUn_randomG04060_001 Musa acuminata GSMUA_AchrUn_randomG04060_001 I
LPERR08G03510 Leersia perrieri LPERR08G03510 I
Lus10015587.g Linum usitatissimum Lus10015587.g I
Lus10032919.g Linum usitatissimum Lus10032919.g I
MDP0000138340 Malus domestica MDP0000138340 N
MDP0000198108 Malus domestica MDP0000198108 N
MDP0000282616 Malus domestica MDP0000282616 I
MDP0000291838 Malus domestica MDP0000291838 N
MDP0000392668 Malus domestica MDP0000392668 N
MDP0000688878 Malus domestica MDP0000688878 N
MDP0000907489 Malus domestica MDP0000907489 N
mgf015836m Mimulus guttatus mgf015836m I
mgf022344m Mimulus guttatus mgf022344m I
MLOC_50406 Hordeum vulgare MLOC_50406 I
MLOC_75297 Hordeum vulgare MLOC_75297 N
MTR_3g093050 Medicago truncatula MTR_3g093050 I
MTR_5g069030 Medicago truncatula MTR_5g069030 I
MTR_8g023840 Medicago truncatula MTR_8g023840 I
MTR_8g023880 Medicago truncatula MTR_8g023880 N
MTR_8g023930 Medicago truncatula MTR_8g023930 I
NAC69 Arabidopsis thaliana AT4G01550 D
OB08G13730 Oryza brachyantha OB08G13730 I
OBART06G00060 Oryza barthii OBART06G00060 N
OBART08G03460 Oryza barthii OBART08G03460 I
OGLUM06G00040 Oryza glumaepatula OGLUM06G00040 N
OGLUM08G03540 Oryza glumaepatula OGLUM08G03540 I
OLONG_000105 Oryza longistaminata OLONG_000105 I
OLONG_004904 Oryza longistaminata OLONG_004904 N
OMERI08G03500 Oryza meridionalis OMERI08G03500 I
ONIVA06G00080 Oryza nivara ONIVA06G00080 N
ONIVA08G03440 Oryza nivara ONIVA08G03440 I
OPUNC06G00030 Oryza punctata OPUNC06G00030 N
OPUNC08G03310 Oryza punctata OPUNC08G03310 I
ORGLA06G0000500 Oryza glaberrima ORGLA06G0000500 N
ORGLA08G0029000 Oryza glaberrima ORGLA08G0029000 I
ORUFI06G00070 Oryza rufipogon ORUFI06G00070 N
ORUFI08G03870 Oryza rufipogon ORUFI08G03870 I
OS06G0101800 Oryza sativa OS06G0101800 N
OS08G0157900 Oryza sativa OS08G0157900 I
Pavir.Fa01901 Panicum virgatum Pavir.Fa01901 I
Pavir.Fb00405 Panicum virgatum Pavir.Fb00405 I
PGSC0003DMG400000555 Solanum tuberosum PGSC0003DMG400000555 I
PGSC0003DMG402027023 Solanum tuberosum PGSC0003DMG402027023 N
Pm019659 Prunus mume Pm019659 I
Pm028711 Prunus mume Pm028711 I
Pm028712 Prunus mume Pm028712 N
Pm028718 Prunus mume Pm028718 N
Pm028720 Prunus mume Pm028720 N
POPTR_0002s15560 Populus trichocarpa POPTR_0002s15560 I
POPTR_0002s18290 Populus trichocarpa POPTR_0002s18290 I
POPTR_0002s18310 Populus trichocarpa POPTR_0002s18310 I
POPTR_0002s18320 Populus trichocarpa POPTR_0002s18320 I
PRUPE_ppa016876mg Prunus persica PRUPE_ppa016876mg N
PRUPE_ppa019780mg Prunus persica PRUPE_ppa019780mg N
PRUPE_ppa019865mg Prunus persica PRUPE_ppa019865mg N
PRUPE_ppa022384mg Prunus persica PRUPE_ppa022384mg I
PRUPE_ppa023197mg Prunus persica PRUPE_ppa023197mg N
PRUPE_ppb017658mg Prunus persica PRUPE_ppb017658mg I
SapurV1A.0003s0330 Salix purpurea SapurV1A.0003s0330 I
SapurV1A.0024s0340 Salix purpurea SapurV1A.0024s0340 I
Sb07g003900 Sorghum bicolor Sb07g003900 I
Sb10g000101 Sorghum bicolor Sb10g000101 N
Si006105m.g Setaria italica Si006105m.g N
Si013369m.g Setaria italica Si013369m.g I
Solyc03g080090.2 Solanum lycopersicum Solyc03g080090.2 I
Solyc06g073050.2 Solanum lycopersicum Solyc06g073050.2 N
TCM_015535 Theobroma cacao TCM_015535 I
Thhalv10007665m.g Eutrema salsugineum Thhalv10007665m.g I
Thhalv10028684m.g Eutrema salsugineum Thhalv10028684m.g I
Traes_4AL_22CE41C6F Triticum aestivum Traes_4AL_22CE41C6F N
Traes_7AL_669D4AE47 Triticum aestivum Traes_7AL_669D4AE47 I
Traes_7BL_0C386426A Triticum aestivum Traes_7BL_0C386426A I
Traes_7DL_AB67A0B36 Triticum aestivum Traes_7DL_AB67A0B36 I
TRIUR3_32613 Triticum urartu TRIUR3_32613 I
VIT_15s0048g02300 Vitis vinifera VIT_15s0048g02300 N
VIT_15s0048g02320 Vitis vinifera VIT_15s0048g02320 I