e_gw1.158.71.1 (Physcomitrella patens)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 e_gw1.158.71.1 T355632_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY6
M07377_2.00 		Arabidopsis thaliana
DNNNHNDHNHNRGTCAACG
CGTTGACYNDNDHNDNNNH		 Dap-seq
OMalley et al.(2016)
WRKY6_col_a 		0.882 0.898
WRKY6
M07378_2.00 		Arabidopsis thaliana
NNHNWRGTCAACKNH
DNMGTTGACYWNDNN		 Dap-seq
OMalley et al.(2016)
WRKY6_colamp_a 		0.882 0.898
WRKY31
M07408_2.00 		Arabidopsis thaliana
NNNNHNNNNNDRGTCAACG
CGTTGACYHNNNNNDNNNN		 Dap-seq
OMalley et al.(2016)
WRKY31_col_a 		0.881 0.898
WRKY31
M07409_2.00 		Arabidopsis thaliana
NHWRGTCAACKNH
DNMGTTGACYWDN		 Dap-seq
OMalley et al.(2016)
WRKY31_colamp_a 		0.881 0.898
WRKY42
M07404_2.00 		Arabidopsis thaliana
NDWRGTCAACDNNNNDNNHNN
NNDNNHNNNNHGTTGACYWHN		 Dap-seq
OMalley et al.(2016)
WRKY42_col_a 		0.879 0.881
WRKY42
M07405_2.00 		Arabidopsis thaliana
HNDNNNWRGTCAACKNHNDD
HHNDNMGTTGACYWNNNHND		 Dap-seq
OMalley et al.(2016)
WRKY42_colamp_a 		0.879 0.881
WRKY47
M00732_2.00 		Arabidopsis thaliana
NNRGTCAACKN
NMGTTGACYNN		 PBM
Chang et al.(2013)
pTH7913 		0.878 0.881
WRKY47
M07402_2.00 		Arabidopsis thaliana
WRGTCAAMGNHVDK
MHBDNCKTTGACYW		 Dap-seq
OMalley et al.(2016)
WRKY47_col_a 		0.878 0.881
WRKY47
M07403_2.00 		Arabidopsis thaliana
NNNHWRGTCAACKNHNNNN
NNNNDNMGTTGACYWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY47_colamp_a 		0.878 0.881
WRKY40
M02548_2.00 		Arabidopsis thaliana
NRGTCAWN
NWTGACYN		 PBM
Weirauch et al.(2014)
pTH8398 		0.814 0.610
WRKY40
M07379_2.00 		Arabidopsis thaliana
NNNAAAGTCAAVR
YBTTGACTTTNNN		 Dap-seq
OMalley et al.(2016)
WRKY40_colamp_a 		0.814 0.610
WRKY40
M07380_2.00 		Arabidopsis thaliana
NNVAAAGTCAAVRNH
DNYBTTGACTTTBNN		 Dap-seq
OMalley et al.(2016)
WRKY40_col 		0.814 0.610
WRKY40
M08180_2.00 		Arabidopsis thaliana
NNAGTCAANN
NNTTGACTNN		 ChIP-seq
Mathelier et al.(2014)
MA1085.2 		0.814 0.610
WRKY60
M02551_2.00 		Arabidopsis thaliana
NYGGTCAAMNN
NNKTTGACCRN		 PBM
Weirauch et al.(2014)
pTH7379 		0.814 0.627
WRKY18
M02560_2.00 		Arabidopsis thaliana
NNRGTCAANN
NNTTGACYNN		 PBM
Weirauch et al.(2014)
pTH7360 		0.812 0.661
WRKY18
M00900_2.00 		Arabidopsis thaliana
NVGTCNN
NNGACBN		 PBM
Franco-Zorrilla et al.(2014)
WRKY18 		0.812 0.661
WRKY18
M07416_2.00 		Arabidopsis thaliana
NNHRGTCAASR
YSTTGACYDNN		 Dap-seq
OMalley et al.(2016)
WRKY18_col_a 		0.812 0.661
WRKY18
M07417_2.00 		Arabidopsis thaliana
NNNHWAGTCAANR
YNTTGACTWDNNN		 Dap-seq
OMalley et al.(2016)
WRKY18_colamp_a 		0.812 0.661
WRKY18
M11465_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRKY18_Q2 		0.812 0.661
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.158.71.1 WRKY 2 60

Links

Other WRKY family TFs
Other Physcomitrella patens TFs

757 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29950.m001171 Ricinus communis 29950.m001171 I
ANAC087 Arabidopsis thaliana AT5G18270 D
ANAC087 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001462 I
Aquca_014_00944 Aquilegia coerulea Aquca_014_00944 I
ATNAC2 Arabidopsis lyrata fgenesh2_kg.7__3461__AT5G39610.1 I
ATNAC3 Arabidopsis lyrata fgenesh2_kg.5__665__AT3G29035.1 I
BGIOSGA001578 Oryza indica BGIOSGA001578 I
BGIOSGA002597 Oryza indica BGIOSGA002597 I
Bo00578s090 Brassica oleracea Bo00578s090 I
Bo2g015440 Brassica oleracea Bo2g015440 I
Bo3g013050 Brassica oleracea Bo3g013050 I
Bo6g062160 Brassica oleracea Bo6g062160 I
Bo9g175670 Brassica oleracea Bo9g175670 I
Bostr.10058s0039 Boechera stricta Bostr.10058s0039 I
Bostr.26527s0381 Boechera stricta Bostr.26527s0381 I
Bra006449 Brassica rapa Bra006449 I
Bra023669 Brassica rapa Bra023669 I
Bra025658 Brassica rapa Bra025658 I
Bra028435 Brassica rapa Bra028435 I
Bra036223 Brassica rapa Bra036223 I
Cagra.0906s0022 Capsella grandiflora Cagra.0906s0022 I
Carubv10001373m.g Capsella rubella Carubv10001373m.g I
Carubv10005201m.g Capsella rubella Carubv10005201m.g I
Carubv10017737m.g Capsella rubella Carubv10017737m.g I
cassava25877.m1 Manihot esculenta cassava25877.m1 I
cassava35698.valid.m1 Manihot esculenta cassava35698.valid.m1 I
Ca_08255 Cicer arietinum Ca_08255 I
Ca_19144 Cicer arietinum Ca_19144 I
chr1.CM0104.260.nc Lotus japonicus chr1.CM0104.260.nc I
Ciclev10012093m.g Citrus clementina Ciclev10012093m.g I
Ciclev10020549m.g Citrus clementina Ciclev10020549m.g I
Cla010484 Citrullus lanatus Cla010484 I
Cla012339 Citrullus lanatus Cla012339 I
Cucsa.002980 Cucumis sativus Cucsa.002980 I
Eucgr.A02074 Eucalyptus grandis Eucgr.A02074 I
Eucgr.K01472 Eucalyptus grandis Eucgr.K01472 I
evm.TU.supercontig_594.1 Carica papaya evm.TU.supercontig_594.1 I
F775_16032 Aegilops tauschii F775_16032 I
F775_24687 Aegilops tauschii F775_24687 I
F775_25867 Aegilops tauschii F775_25867 N
F775_29497 Aegilops tauschii F775_29497 I
gene04424-v1.0-hybrid Fragaria vesca gene04424-v1.0-hybrid I
gene20686-v1.0-hybrid Fragaria vesca gene20686-v1.0-hybrid I
GLYMA02G07760 Glycine max GLYMA02G07760 I
GLYMA16G04720 Glycine max GLYMA16G04720 I
GLYMA16G26810 Glycine max GLYMA16G26810 I
GLYMA19G28515 Glycine max GLYMA19G28515 I
Gorai.007G267700 Gossypium raimondii Gorai.007G267700 I
Gorai.013G118000 Gossypium raimondii Gorai.013G118000 I
GSMUA_Achr3G09520_001 Musa acuminata GSMUA_Achr3G09520_001 I
GSMUA_Achr5G07600_001 Musa acuminata GSMUA_Achr5G07600_001 I
GSMUA_Achr6G08600_001 Musa acuminata GSMUA_Achr6G08600_001 I
GSMUA_Achr6G32290_001 Musa acuminata GSMUA_Achr6G32290_001 I
GSMUA_Achr7G18330_001 Musa acuminata GSMUA_Achr7G18330_001 I
GSMUA_Achr8G21470_001 Musa acuminata GSMUA_Achr8G21470_001 I
GSMUA_Achr9G16920_001 Musa acuminata GSMUA_Achr9G16920_001 I
LPERR01G00270 Leersia perrieri LPERR01G00270 I
Lus10003435.g Linum usitatissimum Lus10003435.g I
Lus10026879.g Linum usitatissimum Lus10026879.g I
MDP0000129335 Malus domestica MDP0000129335 I
MDP0000184069 Malus domestica MDP0000184069 I
MDP0000232050 Malus domestica MDP0000232050 I
MLOC_72737 Hordeum vulgare MLOC_72737 I
MTR_6g032770 Medicago truncatula MTR_6g032770 I
MTR_7g085260 Medicago truncatula MTR_7g085260 I
NAC59 Arabidopsis thaliana AT3G29035 D
NAC92 Arabidopsis thaliana AT5G39610 D
OB01G10300 Oryza brachyantha OB01G10300 I
OBART01G00360 Oryza barthii OBART01G00360 I
OBART01G16620 Oryza barthii OBART01G16620 I
OGLUM01G00350 Oryza glumaepatula OGLUM01G00350 I
OGLUM01G19440 Oryza glumaepatula OGLUM01G19440 I
OLONG_022415 Oryza longistaminata OLONG_022415 I
OMERI01G15210 Oryza meridionalis OMERI01G15210 I
OMERI01G15230 Oryza meridionalis OMERI01G15230 I
ONIVA01G00280 Oryza nivara ONIVA01G00280 I
ONIVA01G18370 Oryza nivara ONIVA01G18370 I
orange1.1g016542m.g Citrus sinensis orange1.1g016542m.g I
orange1.1g018950m.g Citrus sinensis orange1.1g018950m.g I
ORGLA12G0187900 Oryza glaberrima ORGLA12G0187900 I
ORUFI01G00320 Oryza rufipogon ORUFI01G00320 I
ORUFI01G18470 Oryza rufipogon ORUFI01G18470 I
OS01G0104500 Oryza sativa OS01G0104500 I
OS01G0393100 Oryza sativa OS01G0393100 I
Pavir.Ba02955 Panicum virgatum Pavir.Ba02955 I
Pavir.Bb02033 Panicum virgatum Pavir.Bb02033 I
Pavir.Eb00839 Panicum virgatum Pavir.Eb00839 I
Pavir.Eb00976 Panicum virgatum Pavir.Eb00976 I
Pavir.J21394 Panicum virgatum Pavir.J21394 I
Pavir.J27836 Panicum virgatum Pavir.J27836 N
Pavir.J39049 Panicum virgatum Pavir.J39049 I
Pm025307 Prunus mume Pm025307 I
POPTR_0013s05110 Populus trichocarpa POPTR_0013s05110 I
POPTR_0019s04710 Populus trichocarpa POPTR_0019s04710 I
PRUPE_ppa005770mg Prunus persica PRUPE_ppa005770mg I
PRUPE_ppa007883mg Prunus persica PRUPE_ppa007883mg I
SapurV1A.0308s0280 Salix purpurea SapurV1A.0308s0280 I
SapurV1A.0867s0130 Salix purpurea SapurV1A.0867s0130 I
SapurV1A.1196s0010 Salix purpurea SapurV1A.1196s0010 I
SapurV1A.2283s0010 Salix purpurea SapurV1A.2283s0010 I
Si002003m.g Setaria italica Si002003m.g N
Si002074m.g Setaria italica Si002074m.g I
Si030284m.g Setaria italica Si030284m.g N
TCM_026028 Theobroma cacao TCM_026028 I
Thhalv10004583m.g Eutrema salsugineum Thhalv10004583m.g I
Thhalv10014060m.g Eutrema salsugineum Thhalv10014060m.g I
Thhalv10027874m.g Eutrema salsugineum Thhalv10027874m.g I
TRAES3BF020100120CFD_g Triticum aestivum TRAES3BF020100120CFD_g I
Traes_3DS_930F3B5AD Triticum aestivum Traes_3DS_930F3B5AD I
Traes_4AS_B95A1C3A1 Triticum aestivum Traes_4AS_B95A1C3A1 I
Traes_5AL_373E730BB Triticum aestivum Traes_5AL_373E730BB I
Traes_5BL_59AFA4B01 Triticum aestivum Traes_5BL_59AFA4B01 I
Traes_7AL_38B48B7B2 Triticum aestivum Traes_7AL_38B48B7B2 N
Traes_7AL_C8835D919 Triticum aestivum Traes_7AL_C8835D919 N
Traes_7AS_7A7A0CF5B Triticum aestivum Traes_7AS_7A7A0CF5B I
Traes_7BL_2782B04F1 Triticum aestivum Traes_7BL_2782B04F1 N
Traes_7BS_BA1111780 Triticum aestivum Traes_7BS_BA1111780 N
Traes_7DS_2452C1E32 Triticum aestivum Traes_7DS_2452C1E32 I
TRIUR3_00446 Triticum urartu TRIUR3_00446 I
TRIUR3_00447 Triticum urartu TRIUR3_00447 N
TRIUR3_11787 Triticum urartu TRIUR3_11787 N
TRIUR3_23644 Triticum urartu TRIUR3_23644 I
TRIUR3_25136 Triticum urartu TRIUR3_25136 I
TRIUR3_35152 Triticum urartu TRIUR3_35152 I
VIT_08s0007g07640 Vitis vinifera VIT_08s0007g07640 I