Cagra.20277s0001 (Capsella grandiflora)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Cagra.20277s0001 T355906_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY63
M02546_2.00 		Arabidopsis thaliana
NGGTCAAN
NTTGACCN		 PBM
Weirauch et al.(2014)
pTH8182 		0.833 0.848
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.823 0.696
WRKY38
M00901_2.00 		Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN		 PBM
Franco-Zorrilla et al.(2014)
WRKY38 		0.822 0.696
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.20277s0001.1.p WRKY 107 154

Links

Other WRKY family TFs
Other Capsella grandiflora TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.826
Bo2g024040 Brassica oleracea Bo2g024040 I 0.810
Bo2g095820 Brassica oleracea Bo2g095820 I 0.831
Bo5g068250 Brassica oleracea Bo5g068250 I 0.820
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.821
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.818
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.811
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.836
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.842
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I 0.818
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.829
Bra008454 Brassica rapa Bra008454 I 0.824
Bra008459 Brassica rapa Bra008459 I 0.831
Bra020196 Brassica rapa Bra020196 I 0.810
Bra020197 Brassica rapa Bra020197 I 0.810
Bra023211 Brassica rapa Bra023211 I 0.820
Bra028918 Brassica rapa Bra028918 I 0.830
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.826
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.829
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.826
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.829
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.866
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.831
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.827
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.809
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.830
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.830
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.811
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.827
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.822
WRKY38 Arabidopsis thaliana AT5G22570 D 0.822
WRKY62 Arabidopsis thaliana AT5G01900 D 0.823
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.823
WRKY63 Arabidopsis thaliana AT1G66600 D 0.833
WRKY64 Arabidopsis thaliana AT1G66560 I 0.831
WRKY66 Arabidopsis thaliana AT1G80590 I 0.830
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.840
WRKY67 Arabidopsis thaliana AT1G66550 I 0.837