SKUD_203807 (Saccharomyces kudriavzevii)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 SKUD_203807 T383897_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LYS14
M00080_2.00 		Saccharomyces cerevisiae
NNNNGVDWHN
NDWHBCNNNN		 PBM
Badis et al.(2008)
LYS14_2065 		0.683 1.000
LYS14
M01574_2.00 		Saccharomyces cerevisiae
NNGGRAWNN
NNWTYCCNN		 PBM
Zhu et al.(2009)
Lys14 		0.683 1.000
LYS14
M07507_2.00 		Saccharomyces cerevisiae
VCGGAATT
AATTCCGB		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0325.1 		0.683 1.000
LYS14
M08651_2.00 		Saccharomyces cerevisiae
WWTTCCRVYGGRAWH
DWTYCCRBYGGAAWW		 Misc
DeBoer et al.(2011)
YDR034C_133 		0.683 1.000
LYS14
M08652_2.00 		Saccharomyces cerevisiae
DNNVHVCGGAATTTNKNNNN
NNNNMNAAATTCCGBDBNNH		 Misc
DeBoer et al.(2011)
YDR034C_865 		0.683 1.000
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EJT43914 Zinc cluster 151 190

Links

Other Zinc cluster family TFs
Other Saccharomyces kudriavzevii TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G01200 Arabidopsis thaliana AT5G01200 N
AT5G58900 Arabidopsis thaliana AT5G58900 D
Bo3g018460 Brassica oleracea Bo3g018460 I
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I
Bostr.6251s0088 Boechera stricta Bostr.6251s0088 I
Bra002610 Brassica rapa Bra002610 I
Bra006741 Brassica rapa Bra006741 I
Bra028892 Brassica rapa Bra028892 I
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I
Cagra.7888s0001 Capsella grandiflora Cagra.7888s0001 N
Carubv10001741m.g Capsella rubella Carubv10001741m.g N
Carubv10026903m.g Capsella rubella Carubv10026903m.g I
fgenesh1_pg.C_scaffold_6000079 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000079 N
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I
Lus10009884.g Linum usitatissimum Lus10009884.g I
Lus10028264.g Linum usitatissimum Lus10028264.g I
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I
Thhalv10014410m.g Eutrema salsugineum Thhalv10014410m.g I