Bo5g038890 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo5g038890 T000839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF019
M01092_2.00 		Arabidopsis thaliana
CRCCGRCV
BGYCGGYG		 PBM
Lambert et al.(2019)
pTH11534 		0.838 0.960
ERF019
M06571_2.00 		Arabidopsis thaliana
HDYCACCGACAHNNN
NNNDTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a 		0.838 0.960
ERF019
M06572_2.00 		Arabidopsis thaliana
DYCACCGHCRHHDYC
GRHDDYGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g22810_col 		0.838 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g038890.1 AP2 12 63

Links

Other AP2 family TFs
Other Brassica oleracea TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.838
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.831
ERF020 Arabidopsis thaliana AT1G71520 I 0.839
ERF019 Arabidopsis thaliana AT1G22810 D 0.838
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.839
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.836
Bo2g072950 Brassica oleracea Bo2g072950 I 0.829
Bo6g113060 Brassica oleracea Bo6g113060 I 0.842
Bo7g057680 Brassica oleracea Bo7g057680 I 0.843
Bra016133 Brassica rapa Bra016133 I 0.820
Bra007974 Brassica rapa Bra007974 I 0.829
Bra024539 Brassica rapa Bra024539 I 0.851
Bra012345 Brassica rapa Bra012345 I 0.851
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.839
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.838
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.839
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.838
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.699
Ca_15055 Cicer arietinum Ca_15055 I 0.714
Cla012182 Citrullus lanatus Cla012182 I 0.716
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.726
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.726
Cucsa.088640 Cucumis sativus Cucsa.088640 N 0.690
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.762
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.841
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.830
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.707
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.713
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.692
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.705
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.709
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.720
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.721
mgf010891m Mimulus guttatus mgf010891m I 0.701
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.720
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.691
29938.m000611 Ricinus communis 29938.m000611 I 0.726
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.691
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.718
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.718
TCM_036224 Theobroma cacao TCM_036224 I 0.764