Cagra.7053s0020 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.7053s0020 T007804_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.699 0.816
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.699 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.7053s0020.1.p AP2 70 121
Cagra.7053s0020.2.p AP2 12 63
Cagra.7053s0020.3.p AP2 12 63

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00032p00241350 Amborella trichopoda AMTR_s00032p00241350 N
AMTR_s00033p00166000 Amborella trichopoda AMTR_s00033p00166000 N
AMTR_s00059p00116150 Amborella trichopoda AMTR_s00059p00116150 N
Aquca_016_00081 Aquilegia coerulea Aquca_016_00081 N
fgenesh2_kg.3__2996__AT2G12646.1 Arabidopsis lyrata fgenesh2_kg.3__2996__AT2G12646.1 N
fgenesh2_kg.5__2532__AT3G60670.1 Arabidopsis lyrata fgenesh2_kg.5__2532__AT3G60670.1 N
scaffold_303520.1 Arabidopsis lyrata scaffold_303520.1 N
AT2G12646 Arabidopsis thaliana AT2G12646 N
Bostr.13158s0066 Boechera stricta Bostr.13158s0066 N
Bostr.22685s0001 Boechera stricta Bostr.22685s0001 N
BRADI1G32050 Brachypodium distachyon BRADI1G32050 N
BRADI3G05380 Brachypodium distachyon BRADI3G05380 N
BRADI3G06190 Brachypodium distachyon BRADI3G06190 N
Bo3g087070 Brassica oleracea Bo3g087070 N
Bo9g022400 Brassica oleracea Bo9g022400 N
Bra013149 Brassica rapa Bra013149 N
Bra037203 Brassica rapa Bra037203 N
Cagra.2506s0001 Capsella grandiflora Cagra.2506s0001 N
Cagra.6011s0013 Capsella grandiflora Cagra.6011s0013 N
Carubv10015124m.g Capsella rubella Carubv10015124m.g N
Carubv10019494m.g Capsella rubella Carubv10019494m.g N
evm.TU.supercontig_46.74 Carica papaya evm.TU.supercontig_46.74 N
Ca_06740 Cicer arietinum Ca_06740 N
Ciclev10010747m.g Citrus clementina Ciclev10010747m.g N
orange1.1g042361m.g Citrus sinensis orange1.1g042361m.g N
Cucsa.132770 Cucumis sativus Cucsa.132770 N
Eucgr.C00450 Eucalyptus grandis Eucgr.C00450 N
Thhalv10022828m.g Eutrema salsugineum Thhalv10022828m.g N
gene30812-v1.0-hybrid Fragaria vesca gene30812-v1.0-hybrid N
GLYMA09G05781 Glycine max GLYMA09G05781 N
GLYMA09G12330 Glycine max GLYMA09G12330 N
GLYMA13G23360 Glycine max GLYMA13G23360 N
GLYMA15G23920 Glycine max GLYMA15G23920 N
GLYMA17G11470 Glycine max GLYMA17G11470 N
Gorai.004G110400 Gossypium raimondii Gorai.004G110400 N
Gorai.007G089600 Gossypium raimondii Gorai.007G089600 N
Gorai.009G013500 Gossypium raimondii Gorai.009G013500 N
Gorai.010G057300 Gossypium raimondii Gorai.010G057300 N
MLOC_21744 Hordeum vulgare MLOC_21744 N
MLOC_37403 Hordeum vulgare MLOC_37403 N
LPERR02G04770 Leersia perrieri LPERR02G04770 N
LPERR02G05550 Leersia perrieri LPERR02G05550 N
LPERR06G19930 Leersia perrieri LPERR06G19930 N
Lus10008031.g Linum usitatissimum Lus10008031.g N
Lus10008814.g Linum usitatissimum Lus10008814.g N
Lus10038103.g Linum usitatissimum Lus10038103.g N
Lus10039989.g Linum usitatissimum Lus10039989.g N
chr6.CM0037.1230.nd Lotus japonicus chr6.CM0037.1230.nd N
MDP0000639526 Malus domestica MDP0000639526 N
cassava11490.m1 Manihot esculenta cassava11490.m1 N
cassava41034.m1 Manihot esculenta cassava41034.m1 N
cassava446.valid.m1 Manihot esculenta cassava446.valid.m1 N
MTR_4g116300 Medicago truncatula MTR_4g116300 N
mgf020898m Mimulus guttatus mgf020898m N
GSMUA_Achr11G04210_001 Musa acuminata GSMUA_Achr11G04210_001 N
GSMUA_Achr1G09990_001 Musa acuminata GSMUA_Achr1G09990_001 N
GSMUA_Achr2G02580_001 Musa acuminata GSMUA_Achr2G02580_001 N
GSMUA_Achr6G20140_001 Musa acuminata GSMUA_Achr6G20140_001 N
GSMUA_Achr6G30690_001 Musa acuminata GSMUA_Achr6G30690_001 N
GSMUA_Achr6G35220_001 Musa acuminata GSMUA_Achr6G35220_001 N
GSMUA_Achr7G03600_001 Musa acuminata GSMUA_Achr7G03600_001 N
GSMUA_Achr8G33510_001 Musa acuminata GSMUA_Achr8G33510_001 N
GSMUA_Achr9G22490_001 Musa acuminata GSMUA_Achr9G22490_001 N
GSMUA_Achr9G30790_001 Musa acuminata GSMUA_Achr9G30790_001 N
GSMUA_AchrUn_randomG23740_001 Musa acuminata GSMUA_AchrUn_randomG23740_001 N
OBART02G05520 Oryza barthii OBART02G05520 N
OBART06G24000 Oryza barthii OBART06G24000 N
OB02G14750 Oryza brachyantha OB02G14750 N
OB02G15630 Oryza brachyantha OB02G15630 N
ORGLA02G0058300 Oryza glaberrima ORGLA02G0058300 N
ORGLA06G0201700 Oryza glaberrima ORGLA06G0201700 N
OGLUM02G05380 Oryza glumaepatula OGLUM02G05380 N
OGLUM06G25260 Oryza glumaepatula OGLUM06G25260 N
BGIOSGA007009 Oryza indica BGIOSGA007009 N
BGIOSGA007635 Oryza indica BGIOSGA007635 N
BGIOSGA023427 Oryza indica BGIOSGA023427 N
OLONG_011712 Oryza longistaminata OLONG_011712 N
OMERI06G23930 Oryza meridionalis OMERI06G23930 N
ONIVA02G05860 Oryza nivara ONIVA02G05860 N
ONIVA03G43780 Oryza nivara ONIVA03G43780 N
OPUNC02G04680 Oryza punctata OPUNC02G04680 N
OPUNC02G05490 Oryza punctata OPUNC02G05490 N
OPUNC06G21750 Oryza punctata OPUNC06G21750 N
ORUFI02G05620 Oryza rufipogon ORUFI02G05620 N
OS02G0172800 Oryza sativa OS02G0172800 N
OS02G0183000 Oryza sativa OS02G0183000 N
OS06G0666100 Oryza sativa OS06G0666100 N
Pavir.Aa03378 Panicum virgatum Pavir.Aa03378 N
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N
Pavir.Ab00641 Panicum virgatum Pavir.Ab00641 N
Pavir.Da00255 Panicum virgatum Pavir.Da00255 N
Pavir.Db00476 Panicum virgatum Pavir.Db00476 N
Pavir.J35161 Panicum virgatum Pavir.J35161 N
PDK_20s1316692g001 Phoenix dactylifera PDK_20s1316692g001 N
PDK_20s1530701g001 Phoenix dactylifera PDK_20s1530701g001 N
POPTR_0006s05950 Populus trichocarpa POPTR_0006s05950 N
POPTR_0018s12380 Populus trichocarpa POPTR_0018s12380 N
Pm017841 Prunus mume Pm017841 N
Pm027672 Prunus mume Pm027672 N
PRUPE_ppa019806mg Prunus persica PRUPE_ppa019806mg N
PRUPE_ppa023785mg Prunus persica PRUPE_ppa023785mg N
29417.m000034 Ricinus communis 29417.m000034 N
30090.m000247 Ricinus communis 30090.m000247 N
SapurV1A.0306s0210 Salix purpurea SapurV1A.0306s0210 N
SapurV1A.2696s0020 Salix purpurea SapurV1A.2696s0020 N
SELMODRAFT_4756 Selaginella moellendorffii SELMODRAFT_4756 N
SELMODRAFT_4832 Selaginella moellendorffii SELMODRAFT_4832 N
Si018139m.g Setaria italica Si018139m.g N
Si019544m.g Setaria italica Si019544m.g N
Solyc07g007320.1 Solanum lycopersicum Solyc07g007320.1 N
Solyc12g010470.1 Solanum lycopersicum Solyc12g010470.1 N
PGSC0003DMG400007885 Solanum tuberosum PGSC0003DMG400007885 N
Sb04g004830 Sorghum bicolor Sb04g004830 N
Sb04g005680 Sorghum bicolor Sb04g005680 N
Sb10g026620 Sorghum bicolor Sb10g026620 N
TCM_038233 Theobroma cacao TCM_038233 N
Traes_6AS_3CC6C63F9 Triticum aestivum Traes_6AS_3CC6C63F9 N
Traes_6BS_4DA724E79 Triticum aestivum Traes_6BS_4DA724E79 N
Traes_6BS_A7DE5BFD1 Triticum aestivum Traes_6BS_A7DE5BFD1 N
Traes_6DS_9C50DA0DE Triticum aestivum Traes_6DS_9C50DA0DE N
Traes_6DS_CA4C01DEF Triticum aestivum Traes_6DS_CA4C01DEF N
Traes_7AL_5E9E6A334 Triticum aestivum Traes_7AL_5E9E6A334 N
Traes_7DL_B446D4CC6 Triticum aestivum Traes_7DL_B446D4CC6 N
TRIUR3_16881 Triticum urartu TRIUR3_16881 N
TRIUR3_33737 Triticum urartu TRIUR3_33737 N
VIT_02s0154g00150 Vitis vinifera VIT_02s0154g00150 N
VIT_11s0118g00600 Vitis vinifera VIT_11s0118g00600 N
VIT_15s0048g00580 Vitis vinifera VIT_15s0048g00580 N
GRMZM2G017882 Zea mays GRMZM2G017882 N
GRMZM2G070295 Zea mays GRMZM2G070295 N