Carubv10001099m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10001099m.g T007809_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.788 0.980
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.788 0.980
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.685 0.857
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001099m AP2 149 200

Links

Other AP2 family TFs
Other Capsella rubella TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.794
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.756
DREB2A Arabidopsis thaliana AT5G05410 D 0.788
DREB2B Arabidopsis thaliana AT3G11020 I 0.715
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.785
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.756
Bo1g141310 Brassica oleracea Bo1g141310 I 0.762
Bo2g006960 Brassica oleracea Bo2g006960 I 0.767
Bo3g063910 Brassica oleracea Bo3g063910 I 0.736
Bo5g136930 Brassica oleracea Bo5g136930 I 0.739
Bo9g177130 Brassica oleracea Bo9g177130 I 0.686
Bra034159 Brassica rapa Bra034159 I 0.752
Bra029889 Brassica rapa Bra029889 I 0.739
Bra028759 Brassica rapa Bra028759 I 0.767
Bra005852 Brassica rapa Bra005852 I 0.762
Bra001386 Brassica rapa Bra001386 I 0.737
PK07402.1 Cannabis sativa PK07402.1 D 0.685
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I 0.699
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.774
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.794
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.774
Carubv10023556m.g Capsella rubella Carubv10023556m.g I 0.699
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.703
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.681
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.774
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.716
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.726
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.732
cassava46663.m1 Manihot esculenta cassava46663.m1 I 0.690
MTR_7g070220 Medicago truncatula MTR_7g070220 I 0.693
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.679
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.682
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.698
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.683
29820.m001008 Ricinus communis 29820.m001008 I 0.685
29729.m002292 Ricinus communis 29729.m002292 I 0.685
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.697
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.697
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I 0.712
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.719
TCM_021596 Theobroma cacao TCM_021596 I 0.680
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.680