Pavir.J08481 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J08481 T009567_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J08481.1.p AP2 76 137
Pavir.J08481.1.p AP2 179 213

Links

Other AP2 family TFs
Other Panicum virgatum TFs

260 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_02400 Aegilops tauschii F775_02400 I 0.705
F775_06373 Aegilops tauschii F775_06373 N 0.698
AMTR_s00019p00086450 Amborella trichopoda AMTR_s00019p00086450 I 0.764
AMTR_s00101p00022740 Amborella trichopoda AMTR_s00101p00022740 N 0.729
AMTR_s00202p00017170 Amborella trichopoda AMTR_s00202p00017170 N 0.697
Aquca_016_00348 Aquilegia coerulea Aquca_016_00348 I 0.747
Aquca_048_00034 Aquilegia coerulea Aquca_048_00034 I 0.759
Aquca_074_00065 Aquilegia coerulea Aquca_074_00065 I 0.710
ADAP Arabidopsis lyrata fgenesh2_kg.1__1760__AT1G16060.1 N 0.709
fgenesh2_kg.2__2276__AT1G79700.2 Arabidopsis lyrata fgenesh2_kg.2__2276__AT1G79700.2 I 0.747
WRI1 Arabidopsis lyrata fgenesh2_kg.5__1822__AT3G54320.1 N 0.753
ADAP Arabidopsis thaliana AT1G16060 I 0.742
AT1G79700 Arabidopsis thaliana AT1G79700 I 0.741
WRI1 Arabidopsis thaliana AT3G54320 I 0.760
Bostr.0697s0045 Boechera stricta Bostr.0697s0045 I 0.760
Bostr.20129s0410 Boechera stricta Bostr.20129s0410 I 0.747
Bostr.7128s0222 Boechera stricta Bostr.7128s0222 N 0.709
BRADI2G18570 Brachypodium distachyon BRADI2G18570 I 0.705
BRADI2G48130 Brachypodium distachyon BRADI2G48130 N 0.726
BRADI3G36820 Brachypodium distachyon BRADI3G36820 N 0.682
BRADI4G30617 Brachypodium distachyon BRADI4G30617 I 0.764
BRADI4G43877 Brachypodium distachyon BRADI4G43877 I 0.738
Bo5g021520 Brassica oleracea Bo5g021520 N 0.705
Bo6g067950 Brassica oleracea Bo6g067950 I 0.760
Bo6g124080 Brassica oleracea Bo6g124080 N 0.708
Bo8g083590 Brassica oleracea Bo8g083590 I 0.760
Bra003178 Brassica rapa Bra003178 N 0.753
Bra007066 Brassica rapa Bra007066 N 0.753
Bra026082 Brassica rapa Bra026082 I 0.738
Bra035137 Brassica rapa Bra035137 I 0.747
PK04008.1 Cannabis sativa PK04008.1 I 0.759
PK24809.1 Cannabis sativa PK24809.1 I 0.708
PK26651.1 Cannabis sativa PK26651.1 I 0.753
Cagra.0562s0024 Capsella grandiflora Cagra.0562s0024 I 0.760
Cagra.1725s0044 Capsella grandiflora Cagra.1725s0044 I 0.743
Carubv10010918m.g Capsella rubella Carubv10010918m.g N 0.698
Carubv10018845m.g Capsella rubella Carubv10018845m.g I 0.760
Carubv10020688m.g Capsella rubella Carubv10020688m.g N 0.702
evm.TU.contig_28586.3 Carica papaya evm.TU.contig_28586.3 N 0.689
evm.TU.supercontig_14.38 Carica papaya evm.TU.supercontig_14.38 N 0.720
evm.TU.supercontig_199.10 Carica papaya evm.TU.supercontig_199.10 I 0.759
evm.TU.supercontig_54.28 Carica papaya evm.TU.supercontig_54.28 N 0.758
Ca_03306 Cicer arietinum Ca_03306 N 0.702
Ca_10533 Cicer arietinum Ca_10533 N 0.703
Ca_17532 Cicer arietinum Ca_17532 N 0.749
Ca_20689 Cicer arietinum Ca_20689 N 0.721
Cla015555 Citrullus lanatus Cla015555 N 0.728
Cla019044 Citrullus lanatus Cla019044 N 0.726
Cla020765 Citrullus lanatus Cla020765 N 0.739
Ciclev10003896m.g Citrus clementina Ciclev10003896m.g N 0.754
Ciclev10010237m.g Citrus clementina Ciclev10010237m.g N 0.731
Ciclev10013824m.g Citrus clementina Ciclev10013824m.g N 0.723
Ciclev10025985m.g Citrus clementina Ciclev10025985m.g I 0.764
Ciclev10033673m.g Citrus clementina Ciclev10033673m.g N 0.691
orange1.1g018990m.g Citrus sinensis orange1.1g018990m.g I 0.764
orange1.1g036423m.g Citrus sinensis orange1.1g036423m.g N 0.754
orange1.1g042319m.g Citrus sinensis orange1.1g042319m.g N 0.723
Cucsa.106090 Cucumis sativus Cucsa.106090 N 0.725
Cucsa.170790 Cucumis sativus Cucsa.170790 I 0.759
Cucsa.282940 Cucumis sativus Cucsa.282940 N 0.750
Eucgr.B03412 Eucalyptus grandis Eucgr.B03412 I 0.677
Eucgr.C00238 Eucalyptus grandis Eucgr.C00238 N 0.710
Eucgr.F03987 Eucalyptus grandis Eucgr.F03987 I 0.764
Eucgr.I01921 Eucalyptus grandis Eucgr.I01921 N 0.704
Eucgr.J00316 Eucalyptus grandis Eucgr.J00316 I 0.723
Eucgr.J02131 Eucalyptus grandis Eucgr.J02131 N 0.723
Thhalv10008118m.g Eutrema salsugineum Thhalv10008118m.g I 0.742
Thhalv10010394m.g Eutrema salsugineum Thhalv10010394m.g N 0.753
gene00377-v1.0-hybrid Fragaria vesca gene00377-v1.0-hybrid N 0.721
gene01262-v1.0-hybrid Fragaria vesca gene01262-v1.0-hybrid I 0.706
gene15913-v1.0-hybrid Fragaria vesca gene15913-v1.0-hybrid N 0.730
gene27659-v1.0-hybrid Fragaria vesca gene27659-v1.0-hybrid N 0.726
GLYMA02G36880 Glycine max GLYMA02G36880 I 0.758
GLYMA04G24010 Glycine max GLYMA04G24010 N 0.726
GLYMA06G30840 Glycine max GLYMA06G30840 N 0.726
GLYMA07G02380 Glycine max GLYMA07G02380 I 0.755
GLYMA08G23630 Glycine max GLYMA08G23630 I 0.755
GLYMA08G24420 Glycine max GLYMA08G24420 N 0.736
GLYMA08G40831 Glycine max GLYMA08G40831 N 0.717
GLYMA09G37540 Glycine max GLYMA09G37540 N 0.703
GLYMA15G34770 Glycine max GLYMA15G34770 N 0.739
GLYMA17G07860 Glycine max GLYMA17G07860 I 0.758
GLYMA18G16236 Glycine max GLYMA18G16236 N 0.718
GLYMA18G49101 Glycine max GLYMA18G49101 N 0.703
Gorai.001G256900 Gossypium raimondii Gorai.001G256900 N 0.723
Gorai.006G025100 Gossypium raimondii Gorai.006G025100 N 0.712
Gorai.008G182500 Gossypium raimondii Gorai.008G182500 N 0.680
Gorai.009G008800 Gossypium raimondii Gorai.009G008800 I 0.743
Gorai.009G122000 Gossypium raimondii Gorai.009G122000 I 0.735
Gorai.011G225700 Gossypium raimondii Gorai.011G225700 I 0.762
Gorai.012G056300 Gossypium raimondii Gorai.012G056300 N 0.696
Gorai.012G098200 Gossypium raimondii Gorai.012G098200 I 0.759
Gorai.013G003400 Gossypium raimondii Gorai.013G003400 I 0.733
LPERR05G19870 Leersia perrieri LPERR05G19870 I 0.700
LPERR08G13500 Leersia perrieri LPERR08G13500 N 0.742
LPERR09G07570 Leersia perrieri LPERR09G07570 N 0.736
LPERR12G01610 Leersia perrieri LPERR12G01610 N 0.689
Lus10001553.g Linum usitatissimum Lus10001553.g N 0.731
Lus10005253.g Linum usitatissimum Lus10005253.g N 0.733
Lus10008939.g Linum usitatissimum Lus10008939.g N 0.707
Lus10013268.g Linum usitatissimum Lus10013268.g N 0.718
Lus10024101.g Linum usitatissimum Lus10024101.g I 0.755
Lus10028880.g Linum usitatissimum Lus10028880.g N 0.714
Lus10030671.g Linum usitatissimum Lus10030671.g N 0.733
Lus10030792.g Linum usitatissimum Lus10030792.g N 0.718
Lus10036719.g Linum usitatissimum Lus10036719.g I 0.709
Lus10037209.g Linum usitatissimum Lus10037209.g I 0.709
Lus10041618.g Linum usitatissimum Lus10041618.g I 0.759
chr2.CM0225.20.nc Lotus japonicus chr2.CM0225.20.nc N 0.703
chr2.CM0608.630.nc Lotus japonicus chr2.CM0608.630.nc N 0.697
chr6.CM0041.30.nd Lotus japonicus chr6.CM0041.30.nd N 0.731
LjSGA_030627.1 Lotus japonicus LjSGA_030627.1 N 0.760
MDP0000133423 Malus domestica MDP0000133423 N 0.726
MDP0000186581 Malus domestica MDP0000186581 N 0.718
MDP0000206674 Malus domestica MDP0000206674 N 0.695
MDP0000231748 Malus domestica MDP0000231748 N 0.730
MDP0000281784 Malus domestica MDP0000281784 I 0.719
MDP0000297698 Malus domestica MDP0000297698 N 0.718
MDP0000318457 Malus domestica MDP0000318457 N 0.726
cassava11368.m1 Manihot esculenta cassava11368.m1 N 0.707
cassava16315.m1 Manihot esculenta cassava16315.m1 N 0.750
cassava39084.m1 Manihot esculenta cassava39084.m1 I 0.709
MTR_2g460730 Medicago truncatula MTR_2g460730 N 0.731
MTR_4g007770 Medicago truncatula MTR_4g007770 N 0.751
MTR_4g130270 Medicago truncatula MTR_4g130270 I 0.735
MTR_6g011490 Medicago truncatula MTR_6g011490 N 0.706
MTR_7g009410 Medicago truncatula MTR_7g009410 N 0.695
MTR_8g044040 Medicago truncatula MTR_8g044040 N 0.737
MTR_8g044070 Medicago truncatula MTR_8g044070 N 0.756
MTR_8g468920 Medicago truncatula MTR_8g468920 N 0.712
mg013664m Mimulus guttatus mg013664m N 0.713
mgf008907m Mimulus guttatus mgf008907m I 0.731
mgf017413m Mimulus guttatus mgf017413m N 0.679
mgf019116m Mimulus guttatus mgf019116m N 0.688
mgf019814m Mimulus guttatus mgf019814m N 0.712
GSMUA_Achr3G03630_001 Musa acuminata GSMUA_Achr3G03630_001 I 0.767
GSMUA_Achr5G04670_001 Musa acuminata GSMUA_Achr5G04670_001 N 0.721
GSMUA_Achr8G09350_001 Musa acuminata GSMUA_Achr8G09350_001 I 0.724
OBART06G03040 Oryza barthii OBART06G03040 N 0.719
OBART09G10730 Oryza barthii OBART09G10730 N 0.736
OBART12G01740 Oryza barthii OBART12G01740 N 0.678
OB05G31600 Oryza brachyantha OB05G31600 I 0.680
OB08G23780 Oryza brachyantha OB08G23780 N 0.737
OB09G17420 Oryza brachyantha OB09G17420 I 0.766
OB11G11380 Oryza brachyantha OB11G11380 I 0.728
OB12G11690 Oryza brachyantha OB12G11690 I 0.728
ORGLA06G0029800 Oryza glaberrima ORGLA06G0029800 N 0.719
ORGLA08G0142100 Oryza glaberrima ORGLA08G0142100 I 0.748
ORGLA09G0079700 Oryza glaberrima ORGLA09G0079700 I 0.766
ORGLA11G0014900 Oryza glaberrima ORGLA11G0014900 I 0.728
ORGLA12G0015400 Oryza glaberrima ORGLA12G0015400 N 0.704
OGLUM08G17060 Oryza glumaepatula OGLUM08G17060 N 0.742
OGLUM09G11130 Oryza glumaepatula OGLUM09G11130 I 0.766
OGLUM11G01480 Oryza glumaepatula OGLUM11G01480 N 0.715
BGIOSGA017664 Oryza indica BGIOSGA017664 I 0.681
BGIOSGA021927 Oryza indica BGIOSGA021927 N 0.719
BGIOSGA028751 Oryza indica BGIOSGA028751 I 0.748
BGIOSGA030783 Oryza indica BGIOSGA030783 I 0.766
BGIOSGA034580 Oryza indica BGIOSGA034580 N 0.704
BGIOSGA036704 Oryza indica BGIOSGA036704 N 0.704
OLONG_002862 Oryza longistaminata OLONG_002862 N 0.700
OLONG_014256 Oryza longistaminata OLONG_014256 I 0.681
OMERI01G26790 Oryza meridionalis OMERI01G26790 I 0.700
OMERI06G03270 Oryza meridionalis OMERI06G03270 N 0.686
OMERI08G13500 Oryza meridionalis OMERI08G13500 N 0.742
OMERI09G08520 Oryza meridionalis OMERI09G08520 N 0.736
OMERI11G02080 Oryza meridionalis OMERI11G02080 N 0.704
OMERI12G00060 Oryza meridionalis OMERI12G00060 N 0.704
ONIVA03G39530 Oryza nivara ONIVA03G39530 N 0.704
ONIVA06G03970 Oryza nivara ONIVA06G03970 N 0.719
ONIVA08G17820 Oryza nivara ONIVA08G17820 N 0.742
ONIVA09G10420 Oryza nivara ONIVA09G10420 I 0.766
ONIVA11G01800 Oryza nivara ONIVA11G01800 N 0.704
OPUNC05G21440 Oryza punctata OPUNC05G21440 I 0.681
OPUNC08G14310 Oryza punctata OPUNC08G14310 N 0.739
OPUNC09G09320 Oryza punctata OPUNC09G09320 N 0.702
OPUNC11G01540 Oryza punctata OPUNC11G01540 N 0.704
OPUNC12G01560 Oryza punctata OPUNC12G01560 N 0.704
ORUFI06G03000 Oryza rufipogon ORUFI06G03000 N 0.719
ORUFI08G18170 Oryza rufipogon ORUFI08G18170 N 0.742
ORUFI09G11510 Oryza rufipogon ORUFI09G11510 N 0.736
OS05G0536250 Oryza sativa OS05G0536250 I 0.681
OS06G0145700 Oryza sativa OS06G0145700 N 0.706
OS08G0442400 Oryza sativa OS08G0442400 I 0.748
OS09G0423800 Oryza sativa OS09G0423800 I 0.766
OS12G0126300 Oryza sativa OS12G0126300 I 0.728
Pavir.Bb02213 Panicum virgatum Pavir.Bb02213 I 0.757
Pavir.J02216 Panicum virgatum Pavir.J02216 I 0.700
Pavir.J19507 Panicum virgatum Pavir.J19507 N 0.719
Pavir.J34675 Panicum virgatum Pavir.J34675 I 0.700
Pavir.J34903 Panicum virgatum Pavir.J34903 N 0.819
PDK_20s13009417g005 Phoenix dactylifera PDK_20s13009417g005 N 0.697
e_gw1.32.189.1 Physcomitrella patens e_gw1.32.189.1 N 0.707
POPTR_0001s03300 Populus trichocarpa POPTR_0001s03300 I 0.759
POPTR_0003s18350 Populus trichocarpa POPTR_0003s18350 N 0.709
POPTR_0006s19360 Populus trichocarpa POPTR_0006s19360 N 0.699
POPTR_0008s01260 Populus trichocarpa POPTR_0008s01260 N 0.747
POPTR_0010s10290 Populus trichocarpa POPTR_0010s10290 N 0.688
POPTR_0010s25340 Populus trichocarpa POPTR_0010s25340 N 0.700
POPTR_0017s11470 Populus trichocarpa POPTR_0017s11470 N 0.707
POPTR_0018s11110 Populus trichocarpa POPTR_0018s11110 N 0.731
Pm006561 Prunus mume Pm006561 N 0.697
Pm008629 Prunus mume Pm008629 I 0.759
Pm013856 Prunus mume Pm013856 N 0.730
Pm015847 Prunus mume Pm015847 N 0.693
Pm017032 Prunus mume Pm017032 N 0.753
PRUPE_ppa007768mg Prunus persica PRUPE_ppa007768mg N 0.730
PRUPE_ppa022243mg Prunus persica PRUPE_ppa022243mg N 0.697
PRUPE_ppa022978mg Prunus persica PRUPE_ppa022978mg N 0.693
PRUPE_ppa023152mg Prunus persica PRUPE_ppa023152mg I 0.759
PRUPE_ppa024318mg Prunus persica PRUPE_ppa024318mg N 0.707
29822.m003477 Ricinus communis 29822.m003477 N 0.707
30069.m000440 Ricinus communis 30069.m000440 N 0.751
30114.m000507 Ricinus communis 30114.m000507 N 0.697
SapurV1A.0036s0830 Salix purpurea SapurV1A.0036s0830 N 0.710
SapurV1A.0153s0330 Salix purpurea SapurV1A.0153s0330 I 0.759
SapurV1A.1535s0040 Salix purpurea SapurV1A.1535s0040 I 0.759
SapurV1A.1603s0090 Salix purpurea SapurV1A.1603s0090 I 0.759
SELMODRAFT_108361 Selaginella moellendorffii SELMODRAFT_108361 N 0.753
SELMODRAFT_129793 Selaginella moellendorffii SELMODRAFT_129793 N 0.700
SELMODRAFT_85823 Selaginella moellendorffii SELMODRAFT_85823 N 0.753
Si007857m.g Setaria italica Si007857m.g N 0.722
Si012026m.g Setaria italica Si012026m.g N 0.752
Si022186m.g Setaria italica Si022186m.g I 0.700
Si026433m.g Setaria italica Si026433m.g N 0.752
Si030129m.g Setaria italica Si030129m.g I 0.764
Solyc01g096860.1 Solanum lycopersicum Solyc01g096860.1 I 0.711
Solyc03g117720.2 Solanum lycopersicum Solyc03g117720.2 I 0.752
Solyc06g066390.1 Solanum lycopersicum Solyc06g066390.1 N 0.703
Solyc06g068570.2 Solanum lycopersicum Solyc06g068570.2 I 0.739
Solyc12g010490.1 Solanum lycopersicum Solyc12g010490.1 N 0.697
PGSC0003DMG400002399 Solanum tuberosum PGSC0003DMG400002399 N 0.697
PGSC0003DMG400027502 Solanum tuberosum PGSC0003DMG400027502 N 0.708
Sb02g025080 Sorghum bicolor Sb02g025080 I 0.766
Sb05g001790 Sorghum bicolor Sb05g001790 I 0.789
Sb09g026800 Sorghum bicolor Sb09g026800 I 0.700
Sb10g003160 Sorghum bicolor Sb10g003160 N 0.719
TCM_011797 Theobroma cacao TCM_011797 N 0.690
TCM_018386 Theobroma cacao TCM_018386 N 0.723
TCM_027569 Theobroma cacao TCM_027569 I 0.761
TCM_038442 Theobroma cacao TCM_038442 N 0.726
TCM_044588 Theobroma cacao TCM_044588 I 0.766
Traes_4AL_C863DCEDC Triticum aestivum Traes_4AL_C863DCEDC N 0.714
Traes_5AL_F8DEBE8E7 Triticum aestivum Traes_5AL_F8DEBE8E7 I 0.738
Traes_5BL_B6C71B544 Triticum aestivum Traes_5BL_B6C71B544 I 0.766
Traes_5DL_2CF55DD05 Triticum aestivum Traes_5DL_2CF55DD05 I 0.738
Traes_7AS_A70A185F1 Triticum aestivum Traes_7AS_A70A185F1 N 0.722
TRIUR3_01982 Triticum urartu TRIUR3_01982 I 0.705
TRIUR3_04644 Triticum urartu TRIUR3_04644 N 0.745
TRIUR3_24036 Triticum urartu TRIUR3_24036 N 0.727
VIT_01s0026g01690 Vitis vinifera VIT_01s0026g01690 N 0.711
VIT_09s0018g01650 Vitis vinifera VIT_09s0018g01650 I 0.759
VIT_11s0037g00870 Vitis vinifera VIT_11s0037g00870 N 0.709
VIT_14s0108g00050 Vitis vinifera VIT_14s0108g00050 N 0.707
GRMZM2G073982 Zea mays GRMZM2G073982 N 0.719
GRMZM2G113078 Zea mays GRMZM2G113078 I 0.700
GRMZM2G124524 Zea mays GRMZM2G124524 I 0.789
GRMZM2G131266 Zea mays GRMZM2G131266 N 0.685
GRMZM2G141219 Zea mays GRMZM2G141219 I 0.772
GRMZM2G174834 Zea mays GRMZM2G174834 I 0.750