Thhalv10009842m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10009842m.g T009916_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF019
M01092_2.00 		Arabidopsis thaliana
CRCCGRCV
BGYCGGYG		 PBM
Lambert et al.(2019)
pTH11534 		0.840 0.980
ERF019
M06571_2.00 		Arabidopsis thaliana
HDYCACCGACAHNNN
NNNDTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At1g22810_colamp_a 		0.840 0.980
ERF019
M06572_2.00 		Arabidopsis thaliana
DYCACCGHCRHHDYC
GRHDDYGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g22810_col 		0.840 0.980
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10009842m AP2 12 63

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.840
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.822
ERF020 Arabidopsis thaliana AT1G71520 I 0.830
ERF019 Arabidopsis thaliana AT1G22810 D 0.840
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.838
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.830
Bo7g057680 Brassica oleracea Bo7g057680 I 0.822
Bo5g038890 Brassica oleracea Bo5g038890 I 0.830
Bo2g072950 Brassica oleracea Bo2g072950 I 0.844
Bo6g113060 Brassica oleracea Bo6g113060 I 0.835
Bra007974 Brassica rapa Bra007974 I 0.844
Bra012345 Brassica rapa Bra012345 I 0.830
Bra016133 Brassica rapa Bra016133 I 0.813
Bra024539 Brassica rapa Bra024539 I 0.830
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.830
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.840
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.830
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.840
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.690
Ca_15055 Cicer arietinum Ca_15055 I 0.707
Cla012182 Citrullus lanatus Cla012182 I 0.709
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.718
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.718
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.755
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.834
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.700
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.698
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.707
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.692
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.702
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.713
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.714
mgf010891m Mimulus guttatus mgf010891m I 0.694
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.684
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.699
29938.m000611 Ricinus communis 29938.m000611 I 0.719
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.684
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.711
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.711
TCM_036224 Theobroma cacao TCM_036224 I 0.757