Carubv10010429m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10010429m.g T022852_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M01646_2.00 		Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN		 PBM
Weirauch et al.(2014)
pTH8592 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010429m B3 14 125

Links

Other B3 family TFs
Other Capsella rubella TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_20738 Aegilops tauschii F775_20738 I 0.703
F775_21292 Aegilops tauschii F775_21292 I 0.713
F775_22332 Aegilops tauschii F775_22332 I 0.701
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.733
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.733
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.713
Bo4g197410 Brassica oleracea Bo4g197410 I 0.703
Bo6g079210 Brassica oleracea Bo6g079210 N 0.713
Bra003482 Brassica rapa Bra003482 N 0.713
Bra040478 Brassica rapa Bra040478 I 0.703
PK11025.1 Cannabis sativa PK11025.1 I 0.703
PK21157.1 Cannabis sativa PK21157.1 I 0.713
Cagra.11546s0001 Capsella grandiflora Cagra.11546s0001 I 1.000
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.703
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.703
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.723
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.723
Ca_01368 Cicer arietinum Ca_01368 I 0.733
Cla006845 Citrullus lanatus Cla006845 I 0.703
Cla017937 Citrullus lanatus Cla017937 I 0.723
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.723
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.713
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.723
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.713
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.723
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.713
Eucgr.G02345 Eucalyptus grandis Eucgr.G02345 I 0.800
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.703
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.703
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.723
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.723
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.733
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.713
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.723
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.752
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.723
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.703
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.713
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.733
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.733
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.714
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.703
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.703
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.713
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.792
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.713
LjSGA_031920.1 Lotus japonicus LjSGA_031920.1 I 0.831
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.723
MDP0000138163 Malus domestica MDP0000138163 N 0.713
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.713
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.713
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.713
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.713
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.733
mgf023686m Mimulus guttatus mgf023686m I 0.812
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.733
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.713
OBART03G01650 Oryza barthii OBART03G01650 N 0.713
OBART04G22880 Oryza barthii OBART04G22880 I 0.713
OB02G35380 Oryza brachyantha OB02G35380 I 0.703
OB03G11610 Oryza brachyantha OB03G11610 N 0.713
OB05G32250 Oryza brachyantha OB05G32250 I 0.752
OB10G24100 Oryza brachyantha OB10G24100 N 0.705
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.713
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.713
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.713
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.713
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.713
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.713
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.732
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.713
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.713
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.713
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.713
OS03G0120900 Oryza sativa OS03G0120900 N 0.713
OS04G0581400 Oryza sativa OS04G0581400 I 0.713
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.703
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.703
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.703
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.703
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.713
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.703
Pm024248 Prunus mume Pm024248 I 0.703
Pm028725 Prunus mume Pm028725 N 0.723
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.723
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.703
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.707
30068.m002615 Ricinus communis 30068.m002615 I 0.703
30076.m004471 Ricinus communis 30076.m004471 I 0.723
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.703
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.703
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.723
Si011823m.g Setaria italica Si011823m.g N 0.703
Si036864m.g Setaria italica Si036864m.g N 0.703
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.703
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.703
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.703
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.703
TCM_005014 Theobroma cacao TCM_005014 I 0.713
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.723
Traes_1BL_B8B4C1FB6 Triticum aestivum Traes_1BL_B8B4C1FB6 I 0.713
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.723
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.730
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.703
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.821
Traes_4DL_59B1C9052 Triticum aestivum Traes_4DL_59B1C9052 I 0.743
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.703
TRIUR3_24850 Triticum urartu TRIUR3_24850 I 0.703
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.743
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.713
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.723
GRMZM2G018336 Zea mays GRMZM2G018336 I 0.750
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.703
GRMZM2G065538 Zea mays GRMZM2G065538 I 0.750