Ciclev10001400m.g (Citrus clementina)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Ciclev10001400m.g T024841_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.755 0.755
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10001400m BBR 61 395
Ciclev10001772m BBR 1 335
Ciclev10001776m BBR 1 335
Ciclev10001777m BBR 1 335
Ciclev10001778m BBR 1 335

Links

Other BBR family TFs
Other Citrus clementina TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_005_00425 Aquilegia coerulea Aquca_005_00425 I
ILR3 Arabidopsis lyrata fgenesh2_kg.8__1365__AT5G54680.1 I
ILR3 Arabidopsis thaliana AT5G54680 D
Bo3g021940 Brassica oleracea Bo3g021940 I
Bra002964 Brassica rapa Bra002964 I
Bra022738 Brassica rapa Bra022738 I
Bra029011 Brassica rapa Bra029011 I
PK23013.1 Cannabis sativa PK23013.1 I
Cagra.1629s0040 Capsella grandiflora Cagra.1629s0040 I
Carubv10026758m.g Capsella rubella Carubv10026758m.g I
evm.TU.supercontig_97.78 Carica papaya evm.TU.supercontig_97.78 I
Ca_06956 Cicer arietinum Ca_06956 I
Ca_16355 Cicer arietinum Ca_16355 I
Cla001735 Citrullus lanatus Cla001735 I
Ciclev10009354m.g Citrus clementina Ciclev10009354m.g I
orange1.1g026599m.g Citrus sinensis orange1.1g026599m.g I
Cucsa.267170 Cucumis sativus Cucsa.267170 I
Cucsa.267130 Cucumis sativus Cucsa.267130 I
Eucgr.F03420 Eucalyptus grandis Eucgr.F03420 I
Thhalv10014564m.g Eutrema salsugineum Thhalv10014564m.g I
gene03303-v1.0-hybrid Fragaria vesca gene03303-v1.0-hybrid I
gene24654-v1.0-hybrid Fragaria vesca gene24654-v1.0-hybrid I
GLYMA15G06803 Glycine max GLYMA15G06803 I
GLYMA12G34300 Glycine max GLYMA12G34300 I
GLYMA06G41620 Glycine max GLYMA06G41620 I
GLYMA13G36260 Glycine max GLYMA13G36260 I
GLYMA15G06860 Glycine max GLYMA15G06860 I
Lus10043076.g Linum usitatissimum Lus10043076.g I
Lus10011167.g Linum usitatissimum Lus10011167.g I
MDP0000264803 Malus domestica MDP0000264803 I
cassava24574.valid.m1 Manihot esculenta cassava24574.valid.m1 I
cassava37031.valid.m1 Manihot esculenta cassava37031.valid.m1 I
cassava37032.valid.m1 Manihot esculenta cassava37032.valid.m1 I
MTR_2g082640 Medicago truncatula MTR_2g082640 I
MTR_4g081370 Medicago truncatula MTR_4g081370 I
mgf009119m Mimulus guttatus mgf009119m I
GSMUA_Achr8G33180_001 Musa acuminata GSMUA_Achr8G33180_001 I
GSMUA_Achr3G23080_001 Musa acuminata GSMUA_Achr3G23080_001 I
GSMUA_Achr11G14790_001 Musa acuminata GSMUA_Achr11G14790_001 I
fgenesh1_pg.scaffold_13000185 Physcomitrella patens fgenesh1_pg.scaffold_13000185 I
estExt_gwp_gw1.C_2460032 Physcomitrella patens estExt_gwp_gw1.C_2460032 I
e_gw1.229.33.1 Physcomitrella patens e_gw1.229.33.1 I
POPTR_0011s13580 Populus trichocarpa POPTR_0011s13580 I
POPTR_0001s44230 Populus trichocarpa POPTR_0001s44230 I
Pm029465 Prunus mume Pm029465 I
PRUPE_ppa010730mg Prunus persica PRUPE_ppa010730mg I
PRUPE_ppa009077mg Prunus persica PRUPE_ppa009077mg I
28166.m001054 Ricinus communis 28166.m001054 I
SapurV1A.0712s0010 Salix purpurea SapurV1A.0712s0010 I
SELMODRAFT_165311 Selaginella moellendorffii SELMODRAFT_165311 I
SELMODRAFT_165556 Selaginella moellendorffii SELMODRAFT_165556 I
TCM_030082 Theobroma cacao TCM_030082 I
TCM_031118 Theobroma cacao TCM_031118 I
VIT_12s0059g02650 Vitis vinifera VIT_12s0059g02650 I