TCF12 (Oryzias latipes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSORLG00000005330 T036389_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.914 0.962
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.914 0.962
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.914 0.962
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.914 0.962
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.914 0.962
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.914 0.962
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.914 0.962
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.914 0.962
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.914 0.962
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.914 0.962
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.914 0.962
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.914 0.962
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.914 0.962
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.914 0.962
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.914 0.846
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.914 0.846
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.914 0.846
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.912 0.923
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.912 0.923
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.912 0.923
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.912 0.923
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.912 0.923
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.912 0.923
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.912 0.923
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.912 0.923
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.886 0.923
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.886 0.923
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.886 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.886 0.885
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.886 0.885
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.886 0.885
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.886 0.885
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.886 0.885
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.886 0.885
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.886 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000006719 bHLH 421 474

Links

Other bHLH family TFs
Other Oryzias latipes TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_42450 Aegilops tauschii F775_42450 I
F775_01070 Aegilops tauschii F775_01070 I
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I
fgenesh2_kg.6__2677__AT5G27880.1 Arabidopsis lyrata fgenesh2_kg.6__2677__AT5G27880.1 N
ZFP5 Arabidopsis thaliana AT1G10480 D
GIS2 Arabidopsis thaliana AT5G06650 I
Bostr.29827s0107 Boechera stricta Bostr.29827s0107 N
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I
Bo9g011450 Brassica oleracea Bo9g011450 I
Bo2g007320 Brassica oleracea Bo2g007320 I
Bo2g155500 Brassica oleracea Bo2g155500 N
Bo8g109510 Brassica oleracea Bo8g109510 I
Bo9g166240 Brassica oleracea Bo9g166240 I
Bra028724 Brassica rapa Bra028724 I
Bra008787 Brassica rapa Bra008787 I
Bra020571 Brassica rapa Bra020571 N
PK10012.1 Cannabis sativa PK10012.1 I
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I
Carubv10002570m.g Capsella rubella Carubv10002570m.g I
Carubv10003685m.g Capsella rubella Carubv10003685m.g I
Carubv10003820m.g Capsella rubella Carubv10003820m.g I
Carubv10018785m.g Capsella rubella Carubv10018785m.g I
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I
Ca_23376 Cicer arietinum Ca_23376 N
Ca_08116 Cicer arietinum Ca_08116 I
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I
GLYMA19G40220 Glycine max GLYMA19G40220 I
GLYMA06G14783 Glycine max GLYMA06G14783 I
GLYMA03G37610 Glycine max GLYMA03G37610 I
MLOC_4507 Hordeum vulgare MLOC_4507 I
LPERR09G07930 Leersia perrieri LPERR09G07930 I
LPERR08G07840 Leersia perrieri LPERR08G07840 I
Lus10017229.g Linum usitatissimum Lus10017229.g I
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I
MDP0000165710 Malus domestica MDP0000165710 I
MDP0000121370 Malus domestica MDP0000121370 I
cassava45710.m1 Manihot esculenta cassava45710.m1 I
cassava44297.m1 Manihot esculenta cassava44297.m1 I
MTR_1g077700 Medicago truncatula MTR_1g077700 N
MTR_2g067740 Medicago truncatula MTR_2g067740 N
OBART09G11250 Oryza barthii OBART09G11250 I
OB09G17800 Oryza brachyantha OB09G17800 I
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I
BGIOSGA029710 Oryza indica BGIOSGA029710 I
OLONG_006424 Oryza longistaminata OLONG_006424 I
OMERI09G08780 Oryza meridionalis OMERI09G08780 I
ONIVA09G10990 Oryza nivara ONIVA09G10990 I
OPUNC09G09720 Oryza punctata OPUNC09G09720 I
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I
OS09G0431900 Oryza sativa OS09G0431900 I
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I
Pavir.J36164 Panicum virgatum Pavir.J36164 I
Pm008291 Prunus mume Pm008291 I
30045.m000471 Ricinus communis 30045.m000471 I
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I
Si028367m.g Setaria italica Si028367m.g I
Si037914m.g Setaria italica Si037914m.g I
Si031489m.g Setaria italica Si031489m.g I
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I
Sb02g025390 Sorghum bicolor Sb02g025390 I
Sb01g034110 Sorghum bicolor Sb01g034110 I
TCM_044725 Theobroma cacao TCM_044725 I
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I
TRIUR3_34498 Triticum urartu TRIUR3_34498 I
TRIUR3_22340 Triticum urartu TRIUR3_22340 I
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I
GRMZM2G161255 Zea mays GRMZM2G161255 I
GRMZM2G403590 Zea mays GRMZM2G403590 I
GRMZM2G115388 Zea mays GRMZM2G115388 I
GRMZM2G108818 Zea mays GRMZM2G108818 I
GRMZM2G037574 Zea mays GRMZM2G037574 I
GRMZM2G703281 Zea mays GRMZM2G703281 I