twi (Drosophila pseudoobscura)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 FBgn0243556 T039043_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
twi
M03605_2.00 		Drosophila melanogaster
MACACRTGKB
VMCAYGTGTK		 SELEX
Nitta et al.(2015)
twi_1 		0.914 1.000
twi
M03606_2.00 		Drosophila melanogaster
MNDCMYRHCGVD
HBCGDYRKGHNK		 SELEX
Nitta et al.(2015)
twi_2 		0.914 1.000
twi
M05955_2.00 		Drosophila melanogaster
VCCAGATGTB
VACATCTGGB		 B1H
Zhu et al.(2011)
twi_da_SANGER_5_FBgn0003900 		0.914 1.000
twi
M05956_2.00 		Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN		 B1H
Zhu et al.(2011)
twi_FlyReg_FBgn0003900 		0.914 1.000
twi
M07538_2.00 		Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN		 DNaseI footprinting
Mathelier et al.(2014)
MA0249.1 		0.914 1.000
twi
M09657_2.00 		Drosophila melanogaster
AACAKVTGBBVD
HBVVCABMTGTT		 Misc
Kulakovskiy et al.(2009)
twi 		0.914 1.000
twi
M09892_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$TWI_Q6 		0.914 1.000
TWIST1
M08052_2.00 		Homo sapiens
NNNCCAGATGTNN
NNACATCTGGNNN		 ChIP-seq
Mathelier et al.(2014)
MA1123.1 		0.859 0.882
TWIST1
M08722_2.00 		Homo sapiens
WAATBRRWWMCAGATGB
VCATCTGKWWYYVATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_HUMAN.H11MO.0.A 		0.859 0.882
Twist1
M08766_2.00 		Mus musculus
WAATNRRWWMCAKMTGB
VCAKMTGKWWYYNATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_MOUSE.H11MO.0.B 		0.859 0.882
TWIST1
M09831_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6_01 		0.859 0.882
TWIST1
M09832_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6 		0.859 0.882
Twist2
M01718_2.00 		Mus musculus
NACATATGKN
NMCATATGTN		 PBM
Weirauch et al.(2014)
pTH5033 		0.859 0.843
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0277413 bHLH 379 429

Links

Other bHLH family TFs
Other Drosophila pseudoobscura TFs

234 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_015_00090 Aquilegia coerulea Aquca_015_00090 I
Aquca_047_00006 Aquilegia coerulea Aquca_047_00006 I
ATMYB90 Arabidopsis lyrata scaffold_201358.1 I
scaffold_201357.1 Arabidopsis lyrata scaffold_201357.1 I
scaffold_201356.1 Arabidopsis lyrata scaffold_201356.1 I
MYB113 Arabidopsis lyrata fgenesh2_kg.2__869__AT1G66370.1 I
PAP1 Arabidopsis lyrata fgenesh2_kg.1__4777__AT1G56650.1 I
fgenesh1_pg.C_scaffold_2000950 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000950 I
MYB113 Arabidopsis thaliana AT1G66370 D
MYB75 Arabidopsis thaliana AT1G56650 I
MYB114 Arabidopsis thaliana AT1G66380 I
MYB90 Arabidopsis thaliana AT1G66390 I
Bostr.26959s0279 Boechera stricta Bostr.26959s0279 I
Bo00835s060 Brassica oleracea Bo00835s060 I
Bo6g099880 Brassica oleracea Bo6g099880 I
Bo6g100940 Brassica oleracea Bo6g100940 I
Bra004162 Brassica rapa Bra004162 I
Bra039763 Brassica rapa Bra039763 I
Bra001917 Brassica rapa Bra001917 I
PK17827.1 Cannabis sativa PK17827.1 I
PK05760.1 Cannabis sativa PK05760.1 I
Cagra.2400s0001 Capsella grandiflora Cagra.2400s0001 I
Cagra.2629s0007 Capsella grandiflora Cagra.2629s0007 I
Cagra.0463s0008 Capsella grandiflora Cagra.0463s0008 I
Cagra.0463s0007 Capsella grandiflora Cagra.0463s0007 I
Cagra.0463s0006 Capsella grandiflora Cagra.0463s0006 I
Carubv10020856m.g Capsella rubella Carubv10020856m.g I
Carubv10020888m.g Capsella rubella Carubv10020888m.g I
evm.TU.supercontig_116.38 Carica papaya evm.TU.supercontig_116.38 I
evm.TU.supercontig_51.67 Carica papaya evm.TU.supercontig_51.67 I
evm.TU.supercontig_2742.1 Carica papaya evm.TU.supercontig_2742.1 I
Ca_22078 Cicer arietinum Ca_22078 I
Ca_19630 Cicer arietinum Ca_19630 I
Ciclev10013455m.g Citrus clementina Ciclev10013455m.g I
Eucgr.F02842 Eucalyptus grandis Eucgr.F02842 I
Eucgr.H04157 Eucalyptus grandis Eucgr.H04157 I
Thhalv10019041m.g Eutrema salsugineum Thhalv10019041m.g I
gene31413-v1.0-hybrid Fragaria vesca gene31413-v1.0-hybrid I
GLYMA18G49690 Glycine max GLYMA18G49690 I
GLYMA07G16980 Glycine max GLYMA07G16980 I
GLYMA09G36966 Glycine max GLYMA09G36966 I
GLYMA18G41520 Glycine max GLYMA18G41520 I
GLYMA19G02980 Glycine max GLYMA19G02980 I
Gorai.001G087200 Gossypium raimondii Gorai.001G087200 I
Gorai.001G087400 Gossypium raimondii Gorai.001G087400 I
Gorai.007G268800 Gossypium raimondii Gorai.007G268800 I
Gorai.013G118300 Gossypium raimondii Gorai.013G118300 I
Lus10003277.g Linum usitatissimum Lus10003277.g I
Lus10009129.g Linum usitatissimum Lus10009129.g I
Lus10009130.g Linum usitatissimum Lus10009130.g I
Lus10028513.g Linum usitatissimum Lus10028513.g I
Lus10028514.g Linum usitatissimum Lus10028514.g I
Lus10042522.g Linum usitatissimum Lus10042522.g I
chr1.CM0141.350.nd Lotus japonicus chr1.CM0141.350.nd I
chr1.LjT44L17.240.nd Lotus japonicus chr1.LjT44L17.240.nd I
MDP0000192051 Malus domestica MDP0000192051 I
cassava36364.valid.m1 Manihot esculenta cassava36364.valid.m1 I
MTR_0001s0360 Medicago truncatula MTR_0001s0360 I
MTR_0197s0010 Medicago truncatula MTR_0197s0010 I
MTR_5g078800 Medicago truncatula MTR_5g078800 I
MTR_5g078860 Medicago truncatula MTR_5g078860 I
MTR_5g078910 Medicago truncatula MTR_5g078910 I
MTR_5g078950 Medicago truncatula MTR_5g078950 I
MTR_5g079120 Medicago truncatula MTR_5g079120 I
MTR_5g079220 Medicago truncatula MTR_5g079220 I
MTR_5g079290 Medicago truncatula MTR_5g079290 I
MTR_7g017260 Medicago truncatula MTR_7g017260 I
MTR_8g060940 Medicago truncatula MTR_8g060940 I
mgf019317m Mimulus guttatus mgf019317m I
Pm031337 Prunus mume Pm031337 I
Pm029445 Prunus mume Pm029445 I
Pm029442 Prunus mume Pm029442 I
Pm029440 Prunus mume Pm029440 I
Pm025429 Prunus mume Pm025429 I
PRUPE_ppa026640mg Prunus persica PRUPE_ppa026640mg I
PRUPE_ppa016711mg Prunus persica PRUPE_ppa016711mg I
PRUPE_ppa010069mg Prunus persica PRUPE_ppa010069mg I
27763.m000042 Ricinus communis 27763.m000042 I
Solyc10g086290.1 Solanum lycopersicum Solyc10g086290.1 I
Solyc10g086270.1 Solanum lycopersicum Solyc10g086270.1 I
Solyc10g086260.1 Solanum lycopersicum Solyc10g086260.1 I
Solyc10g086250.1 Solanum lycopersicum Solyc10g086250.1 I
TCM_019192 Theobroma cacao TCM_019192 I
TCM_026054 Theobroma cacao TCM_026054 I
VIT_14s0006g01290 Vitis vinifera VIT_14s0006g01290 I
VIT_02s0033g00450 Vitis vinifera VIT_02s0033g00450 I
VIT_02s0033g00430 Vitis vinifera VIT_02s0033g00430 I
VIT_02s0033g00410 Vitis vinifera VIT_02s0033g00410 I
VIT_02s0033g00400 Vitis vinifera VIT_02s0033g00400 I
VIT_02s0033g00390 Vitis vinifera VIT_02s0033g00390 I