Alligator_sinensis_CCG017823.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG017823.1 T046674_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.914 1.000
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.914 1.000
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.914 1.000
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.914 1.000
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.914 1.000
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.914 1.000
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.914 1.000
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.912 0.962
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.912 0.962
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.912 0.962
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.912 0.962
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.912 0.962
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.912 0.962
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.912 0.962
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.912 0.962
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.912 0.962
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.912 0.962
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.912 0.962
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.912 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.912 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.912 0.885
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.884 0.923
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.884 0.923
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.884 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.884 0.885
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.884 0.885
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.884 0.885
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.884 0.885
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.884 0.885
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.884 0.885
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017823.1 bHLH 369 422

Links

Other bHLH family TFs
Other Alligator sinensis TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01070 Aegilops tauschii F775_01070 I 0.000
F775_42450 Aegilops tauschii F775_42450 I 0.000
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I 0.000
fgenesh2_kg.6__2677__AT5G27880.1 Arabidopsis lyrata fgenesh2_kg.6__2677__AT5G27880.1 N 0.000
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I 0.000
ZFP5 Arabidopsis thaliana AT1G10480 D 0.000
GIS2 Arabidopsis thaliana AT5G06650 I 0.000
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I 0.000
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I 0.000
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I 0.000
Bostr.29827s0107 Boechera stricta Bostr.29827s0107 N 0.000
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I 0.000
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I 0.000
Bo2g007320 Brassica oleracea Bo2g007320 I 0.000
Bo2g155500 Brassica oleracea Bo2g155500 N 0.000
Bo8g109510 Brassica oleracea Bo8g109510 I 0.000
Bo9g011450 Brassica oleracea Bo9g011450 I 0.000
Bo9g166240 Brassica oleracea Bo9g166240 I 0.000
Bra008787 Brassica rapa Bra008787 I 0.000
Bra020571 Brassica rapa Bra020571 N 0.000
Bra028724 Brassica rapa Bra028724 I 0.000
PK10012.1 Cannabis sativa PK10012.1 I 0.000
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I 0.000
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I 0.000
Carubv10002570m.g Capsella rubella Carubv10002570m.g I 0.000
Carubv10003685m.g Capsella rubella Carubv10003685m.g I 0.000
Carubv10003820m.g Capsella rubella Carubv10003820m.g I 0.000
Carubv10018785m.g Capsella rubella Carubv10018785m.g I 0.000
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I 0.000
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I 0.000
Ca_08116 Cicer arietinum Ca_08116 I 0.000
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I 0.000
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I 0.000
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I 0.000
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I 0.000
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I 0.000
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I 0.000
GLYMA03G37610 Glycine max GLYMA03G37610 I 0.000
GLYMA06G14783 Glycine max GLYMA06G14783 I 0.000
GLYMA19G40220 Glycine max GLYMA19G40220 I 0.000
MLOC_4507 Hordeum vulgare MLOC_4507 I 0.000
LPERR08G07840 Leersia perrieri LPERR08G07840 I 0.000
LPERR09G07930 Leersia perrieri LPERR09G07930 I 0.000
Lus10017229.g Linum usitatissimum Lus10017229.g I 0.000
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I 0.000
MDP0000121370 Malus domestica MDP0000121370 I 0.000
MDP0000165710 Malus domestica MDP0000165710 I 0.000
MDP0000166683 Malus domestica MDP0000166683 I 0.000
cassava44297.m1 Manihot esculenta cassava44297.m1 I 0.000
cassava45710.m1 Manihot esculenta cassava45710.m1 I 0.000
OBART09G11250 Oryza barthii OBART09G11250 I 0.000
OB09G17800 Oryza brachyantha OB09G17800 I 0.000
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I 0.000
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I 0.000
BGIOSGA029710 Oryza indica BGIOSGA029710 I 0.000
OLONG_006424 Oryza longistaminata OLONG_006424 I 0.000
OMERI09G08780 Oryza meridionalis OMERI09G08780 I 0.000
ONIVA09G10990 Oryza nivara ONIVA09G10990 I 0.000
OPUNC09G09720 Oryza punctata OPUNC09G09720 I 0.000
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I 0.000
OS09G0431900 Oryza sativa OS09G0431900 I 0.000
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I 0.000
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I 0.000
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I 0.000
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I 0.000
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I 0.000
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I 0.000
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I 0.000
Pavir.J36164 Panicum virgatum Pavir.J36164 I 0.000
e_gw1.34.233.1 Physcomitrella patens e_gw1.34.233.1 I 0.000
Pm008291 Prunus mume Pm008291 I 0.000
30045.m000471 Ricinus communis 30045.m000471 I 0.000
30076.m004693 Ricinus communis 30076.m004693 I 0.000
SapurV1A.0052s0050 Salix purpurea SapurV1A.0052s0050 I 0.000
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I 0.000
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I 0.000
SELMODRAFT_450817 Selaginella moellendorffii SELMODRAFT_450817 I 0.000
SELMODRAFT_450828 Selaginella moellendorffii SELMODRAFT_450828 I 0.000
SELMODRAFT_450830 Selaginella moellendorffii SELMODRAFT_450830 I 0.000
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I 0.000
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I 0.000
Si028367m.g Setaria italica Si028367m.g I 0.000
Si031489m.g Setaria italica Si031489m.g I 0.000
Si037914m.g Setaria italica Si037914m.g I 0.000
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I 0.000
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I 0.000
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I 0.000
Sb01g034110 Sorghum bicolor Sb01g034110 I 0.000
Sb02g025390 Sorghum bicolor Sb02g025390 I 0.000
TCM_044725 Theobroma cacao TCM_044725 I 0.000
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I 0.000
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I 0.000
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I 0.000
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I 0.000
TRIUR3_22340 Triticum urartu TRIUR3_22340 I 0.000
TRIUR3_34498 Triticum urartu TRIUR3_34498 I 0.000
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I 0.000
GRMZM2G037574 Zea mays GRMZM2G037574 I 0.000
GRMZM2G108818 Zea mays GRMZM2G108818 I 0.000
GRMZM2G115388 Zea mays GRMZM2G115388 I 0.000
GRMZM2G161255 Zea mays GRMZM2G161255 I 0.000
GRMZM2G403590 Zea mays GRMZM2G403590 I 0.000
GRMZM2G703281 Zea mays GRMZM2G703281 I 0.000