Gfo_R015175 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R015175 T047358_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.914 0.982
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.914 0.982
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.914 0.982
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.914 0.982
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.914 0.982
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.914 0.982
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.914 0.982
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.914 0.964
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.914 0.964
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.914 0.964
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.914 0.964
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.914 0.964
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.914 0.964
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.914 0.964
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.914 0.964
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.914 0.964
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.914 0.964
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.914 0.964
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.914 0.964
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.914 0.964
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.914 0.964
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.914 0.964
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R015175 bHLH 37 92

Links

Other bHLH family TFs
Other Geospiza fortis TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00002p00268140 Amborella trichopoda AMTR_s00002p00268140 I 0.000
Aquca_017_00582 Aquilegia coerulea Aquca_017_00582 I 0.000
BZO2H3 Arabidopsis lyrata fgenesh2_kg.6__2797__AT5G28770.2 I 0.000
BZIP63 Arabidopsis thaliana AT5G28770 D 0.000
Bostr.25517s0001 Boechera stricta Bostr.25517s0001 I 0.000
BRADI4G02570 Brachypodium distachyon BRADI4G02570 N 0.000
Bo2g151850 Brassica oleracea Bo2g151850 I 0.000
Bo7g093030 Brassica oleracea Bo7g093030 I 0.000
Bra010010 Brassica rapa Bra010010 I 0.000
Bra020620 Brassica rapa Bra020620 I 0.000
PK05128.1 Cannabis sativa PK05128.1 D 0.000
PK09738.1 Cannabis sativa PK09738.1 I 0.000
PK11472.1 Cannabis sativa PK11472.1 I 0.000
Cagra.5456s0001 Capsella grandiflora Cagra.5456s0001 I 0.000
Carubv10001450m.g Capsella rubella Carubv10001450m.g I 0.000
evm.TU.supercontig_52.101 Carica papaya evm.TU.supercontig_52.101 I 0.000
Ca_01234 Cicer arietinum Ca_01234 I 0.000
Ca_03753 Cicer arietinum Ca_03753 I 0.000
Cla005975 Citrullus lanatus Cla005975 I 0.000
Cla011478 Citrullus lanatus Cla011478 I 0.000
Cla015037 Citrullus lanatus Cla015037 I 0.000
Cla020112 Citrullus lanatus Cla020112 I 0.000
Ciclev10001051m.g Citrus clementina Ciclev10001051m.g I 0.000
Ciclev10008515m.g Citrus clementina Ciclev10008515m.g I 0.000
Ciclev10020133m.g Citrus clementina Ciclev10020133m.g I 0.000
orange1.1g012287m.g Citrus sinensis orange1.1g012287m.g I 0.000
orange1.1g013166m.g Citrus sinensis orange1.1g013166m.g I 0.000
orange1.1g015739m.g Citrus sinensis orange1.1g015739m.g I 0.000
Cucsa.133290 Cucumis sativus Cucsa.133290 I 0.000
Cucsa.289120 Cucumis sativus Cucsa.289120 I 0.000
Cucsa.388800 Cucumis sativus Cucsa.388800 I 0.000
Eucgr.C03986 Eucalyptus grandis Eucgr.C03986 I 0.000
Eucgr.H04338 Eucalyptus grandis Eucgr.H04338 I 0.000
Thhalv10004611m.g Eutrema salsugineum Thhalv10004611m.g I 0.000
gene04504-v1.0-hybrid Fragaria vesca gene04504-v1.0-hybrid I 0.000
gene16561-v1.0-hybrid Fragaria vesca gene16561-v1.0-hybrid I 0.000
GLYMA02G13960 Glycine max GLYMA02G13960 I 0.000
GLYMA03G40730 Glycine max GLYMA03G40730 I 0.000
GLYMA10G30410 Glycine max GLYMA10G30410 I 0.000
GLYMA19G43420 Glycine max GLYMA19G43420 I 0.000
GLYMA20G36750 Glycine max GLYMA20G36750 I 0.000
Gorai.001G000600 Gossypium raimondii Gorai.001G000600 I 0.000
Gorai.001G251000 Gossypium raimondii Gorai.001G251000 I 0.000
Gorai.004G246700 Gossypium raimondii Gorai.004G246700 I 0.000
Gorai.007G277300 Gossypium raimondii Gorai.007G277300 I 0.000
LPERR02G04950 Leersia perrieri LPERR02G04950 I 0.000
LPERR06G19690 Leersia perrieri LPERR06G19690 I 0.000
LPERR12G15130 Leersia perrieri LPERR12G15130 I 0.000
Lus10006590.g Linum usitatissimum Lus10006590.g I 0.000
Lus10013059.g Linum usitatissimum Lus10013059.g I 0.000
Lus10015913.g Linum usitatissimum Lus10015913.g I 0.000
Lus10029101.g Linum usitatissimum Lus10029101.g I 0.000
chr5.LjT29J15.10.nc Lotus japonicus chr5.LjT29J15.10.nc I 0.000
MDP0000176747 Malus domestica MDP0000176747 I 0.000
MDP0000183562 Malus domestica MDP0000183562 I 0.000
MDP0000270365 Malus domestica MDP0000270365 I 0.000
MDP0000891108 Malus domestica MDP0000891108 I 0.000
cassava18571.valid.m1 Manihot esculenta cassava18571.valid.m1 I 0.000
cassava22706.valid.m1 Manihot esculenta cassava22706.valid.m1 I 0.000
cassava36728.valid.m1 Manihot esculenta cassava36728.valid.m1 N 0.000
MTR_1g080920 Medicago truncatula MTR_1g080920 I 0.000
MTR_7g115120 Medicago truncatula MTR_7g115120 I 0.000
EuGene.1500010323 Micromonas sp RCC299 EuGene.1500010323 I 0.000
mgf007535m Mimulus guttatus mgf007535m I 0.000
mgf009803m Mimulus guttatus mgf009803m I 0.000
mgf012838m Mimulus guttatus mgf012838m I 0.000
mgf013074m Mimulus guttatus mgf013074m I 0.000
mgf017392m Mimulus guttatus mgf017392m I 0.000
GSMUA_Achr10G08670_001 Musa acuminata GSMUA_Achr10G08670_001 I 0.000
GSMUA_Achr4G28530_001 Musa acuminata GSMUA_Achr4G28530_001 I 0.000
GSMUA_Achr7G07650_001 Musa acuminata GSMUA_Achr7G07650_001 I 0.000
OBART02G05680 Oryza barthii OBART02G05680 I 0.000
OBART02G11580 Oryza barthii OBART02G11580 I 0.000
OBART12G18120 Oryza barthii OBART12G18120 I 0.000
OB02G14920 Oryza brachyantha OB02G14920 I 0.000
OB02G19520 Oryza brachyantha OB02G19520 I 0.000
OB06G31430 Oryza brachyantha OB06G31430 I 0.000
OB12G24740 Oryza brachyantha OB12G24740 I 0.000
ORGLA02G0052000 Oryza glaberrima ORGLA02G0052000 I 0.000
ORGLA02G0104200 Oryza glaberrima ORGLA02G0104200 I 0.000
ORGLA06G0198800 Oryza glaberrima ORGLA06G0198800 I 0.000
OGLUM02G05620 Oryza glumaepatula OGLUM02G05620 I 0.000
OGLUM02G11500 Oryza glumaepatula OGLUM02G11500 I 0.000
OGLUM12G19660 Oryza glumaepatula OGLUM12G19660 I 0.000
BGIOSGA006734 Oryza indica BGIOSGA006734 I 0.000
BGIOSGA007649 Oryza indica BGIOSGA007649 I 0.000
BGIOSGA020738 Oryza indica BGIOSGA020738 I 0.000
BGIOSGA020743 Oryza indica BGIOSGA020743 I 0.000
BGIOSGA037742 Oryza indica BGIOSGA037742 I 0.000
OLONG_006713 Oryza longistaminata OLONG_006713 N 0.000
OMERI02G06470 Oryza meridionalis OMERI02G06470 I 0.000
OMERI02G12230 Oryza meridionalis OMERI02G12230 I 0.000
OMERI06G23650 Oryza meridionalis OMERI06G23650 I 0.000
ONIVA02G06040 Oryza nivara ONIVA02G06040 I 0.000
ONIVA02G12920 Oryza nivara ONIVA02G12920 I 0.000
ONIVA06G27820 Oryza nivara ONIVA06G27820 I 0.000
ONIVA12G16860 Oryza nivara ONIVA12G16860 I 0.000
OPUNC02G10230 Oryza punctata OPUNC02G10230 I 0.000
OPUNC06G21410 Oryza punctata OPUNC06G21410 I 0.000
ORUFI02G05790 Oryza rufipogon ORUFI02G05790 I 0.000
ORUFI02G11610 Oryza rufipogon ORUFI02G11610 I 0.000
ORUFI06G25410 Oryza rufipogon ORUFI06G25410 I 0.000
ORUFI12G20050 Oryza rufipogon ORUFI12G20050 I 0.000
OS02G0175100 Oryza sativa OS02G0175100 I 0.000
OS02G0266800 Oryza sativa OS02G0266800 D 0.000
OS06G0662200 Oryza sativa OS06G0662200 I 0.000
OS12G0601800 Oryza sativa OS12G0601800 I 0.000
Pavir.Aa03364 Panicum virgatum Pavir.Aa03364 I 0.000
Pavir.Ab00505 Panicum virgatum Pavir.Ab00505 I 0.000
Pavir.Ca02738 Panicum virgatum Pavir.Ca02738 I 0.000
Pavir.Cb00258 Panicum virgatum Pavir.Cb00258 I 0.000
CPRF2_PETCR Petroselinum crispum CPRF2_PETCR D 0.000
PDK_20s1417191g003 Phoenix dactylifera PDK_20s1417191g003 I 0.000
PDK_20s1482361g001 Phoenix dactylifera PDK_20s1482361g001 I 0.000
estExt_fgenesh1_pg.C_2060068 Physcomitrella patens estExt_fgenesh1_pg.C_2060068 I 0.000
estExt_Genewise1.C_2060077 Physcomitrella patens estExt_Genewise1.C_2060077 D 0.000
gw1.189.102.1 Physcomitrella patens gw1.189.102.1 I 0.000
gw1.213.115.1 Physcomitrella patens gw1.213.115.1 I 0.000
gw1.220.22.1 Physcomitrella patens gw1.220.22.1 I 0.000
gw1.83.117.1 Physcomitrella patens gw1.83.117.1 I 0.000
POPTR_0005s05470 Populus trichocarpa POPTR_0005s05470 I 0.000
POPTR_0013s03800 Populus trichocarpa POPTR_0013s03800 I 0.000
Pm003522 Prunus mume Pm003522 I 0.000
Pm020231 Prunus mume Pm020231 I 0.000
PRUPE_ppa005367mg Prunus persica PRUPE_ppa005367mg I 0.000
PRUPE_ppa005585mg Prunus persica PRUPE_ppa005585mg I 0.000
PRUPE_ppa011589mg Prunus persica PRUPE_ppa011589mg I 0.000
29598.m000468 Ricinus communis 29598.m000468 I 0.000
SapurV1A.0110s0140 Salix purpurea SapurV1A.0110s0140 I 0.000
SapurV1A.0729s0180 Salix purpurea SapurV1A.0729s0180 I 0.000
SELMODRAFT_270282 Selaginella moellendorffii SELMODRAFT_270282 I 0.000
SELMODRAFT_439017 Selaginella moellendorffii SELMODRAFT_439017 I 0.000
Si017778m.g Setaria italica Si017778m.g I 0.000
Si022331m.g Setaria italica Si022331m.g I 0.000
Solyc01g097330.2 Solanum lycopersicum Solyc01g097330.2 I 0.000
Solyc08g022080.2 Solanum lycopersicum Solyc08g022080.2 I 0.000
PGSC0003DMG400019455 Solanum tuberosum PGSC0003DMG400019455 I 0.000
Sb04g005020 Sorghum bicolor Sb04g005020 I 0.000
Sb08g020600 Sorghum bicolor Sb08g020600 I 0.000
TCM_026349 Theobroma cacao TCM_026349 I 0.000
VIT_01s0010g00930 Vitis vinifera VIT_01s0010g00930 I 0.000
ATBZIP9 Vitis vinifera VIT_04s0008g02750 I 0.000
VIT_07s0141g00170 Vitis vinifera VIT_07s0141g00170 I 0.000
BZO2H3 Vitis vinifera VIT_14s0030g02200 I 0.000
GRMZM2G073427 Zea mays GRMZM2G073427 I 0.000
GRMZM2G098904 Zea mays GRMZM2G098904 I 0.000