Bo4g069230 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo4g069230 T081738_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.787 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.786 0.783
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.786 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.776 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.771 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.771 0.761
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.767 0.826
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.756 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.756 0.717
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.756 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g069230.1 C2H2 ZF 33 55
Bo4g069230.1 C2H2 ZF 77 99

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

343 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00137p00051070 Amborella trichopoda AMTR_s00137p00051070 N
AMTR_s00137p00087340 Amborella trichopoda AMTR_s00137p00087340 N
Aquca_042_00143 Aquilegia coerulea Aquca_042_00143 N
LBD39 Arabidopsis lyrata fgenesh2_kg.7__297__AT4G37540.1 N
LBD37 Arabidopsis lyrata fgenesh2_kg.8__2670__AT5G67420.1 N
LBD38 Arabidopsis lyrata scaffold_502015.1 N
LBD38 Arabidopsis thaliana AT3G49940 N
LBD39 Arabidopsis thaliana AT4G37540 N
LBD37 Arabidopsis thaliana AT5G67420 N
Bostr.0568s0168 Boechera stricta Bostr.0568s0168 N
Bostr.6864s0247 Boechera stricta Bostr.6864s0247 N
Bostr.7867s1612 Boechera stricta Bostr.7867s1612 N
BRADI1G22920 Brachypodium distachyon BRADI1G22920 N
Bo1g003550 Brassica oleracea Bo1g003550 N
Bo2g168020 Brassica oleracea Bo2g168020 N
Bo5g132850 Brassica oleracea Bo5g132850 N
Bo7g063630 Brassica oleracea Bo7g063630 N
Bo7g099150 Brassica oleracea Bo7g099150 N
Bo7g118580 Brassica oleracea Bo7g118580 N
Bo8g079200 Brassica oleracea Bo8g079200 N
Bo9g018500 Brassica oleracea Bo9g018500 N
Bo9g019150 Brassica oleracea Bo9g019150 N
Bra011772 Brassica rapa Bra011772 N
Bra012164 Brassica rapa Bra012164 N
Bra012913 Brassica rapa Bra012913 N
Bra017831 Brassica rapa Bra017831 N
Bra031833 Brassica rapa Bra031833 N
Bra036040 Brassica rapa Bra036040 N
Bra037847 Brassica rapa Bra037847 N
PK03075.1 Cannabis sativa PK03075.1 N
PK03977.1 Cannabis sativa PK03977.1 N
PK15647.1 Cannabis sativa PK15647.1 N
Cagra.0342s0030 Capsella grandiflora Cagra.0342s0030 N
Cagra.10957s0002 Capsella grandiflora Cagra.10957s0002 N
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N
Carubv10005616m.g Capsella rubella Carubv10005616m.g N
Carubv10017944m.g Capsella rubella Carubv10017944m.g N
Carubv10027507m.g Capsella rubella Carubv10027507m.g N
evm.TU.supercontig_106.63 Carica papaya evm.TU.supercontig_106.63 N
evm.TU.supercontig_21.100 Carica papaya evm.TU.supercontig_21.100 N
evm.TU.supercontig_6.40 Carica papaya evm.TU.supercontig_6.40 N
Ca_02208 Cicer arietinum Ca_02208 N
Ca_09342 Cicer arietinum Ca_09342 N
Cla014228 Citrullus lanatus Cla014228 N
Cla020920 Citrullus lanatus Cla020920 N
Ciclev10003746m.g Citrus clementina Ciclev10003746m.g N
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N
Ciclev10029274m.g Citrus clementina Ciclev10029274m.g N
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N
orange1.1g029809m.g Citrus sinensis orange1.1g029809m.g N
orange1.1g029970m.g Citrus sinensis orange1.1g029970m.g N
Cucsa.103050 Cucumis sativus Cucsa.103050 N
Cucsa.352730 Cucumis sativus Cucsa.352730 N
Eucgr.F00115 Eucalyptus grandis Eucgr.F00115 N
Eucgr.G01261 Eucalyptus grandis Eucgr.G01261 N
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N
Thhalv10004811m.g Eutrema salsugineum Thhalv10004811m.g N
Thhalv10010666m.g Eutrema salsugineum Thhalv10010666m.g N
Thhalv10026086m.g Eutrema salsugineum Thhalv10026086m.g N
gene02557-v1.0-hybrid Fragaria vesca gene02557-v1.0-hybrid N
gene05722-v1.0-hybrid Fragaria vesca gene05722-v1.0-hybrid N
gene25541-v1.0-hybrid Fragaria vesca gene25541-v1.0-hybrid N
GLYMA01G40010 Glycine max GLYMA01G40010 N
GLYMA05G22120 Glycine max GLYMA05G22120 N
GLYMA10G40421 Glycine max GLYMA10G40421 N
GLYMA11G05280 Glycine max GLYMA11G05280 N
GLYMA14G09750 Glycine max GLYMA14G09750 N
GLYMA17G17540 Glycine max GLYMA17G17540 N
GLYMA17G35440 Glycine max GLYMA17G35440 N
GLYMA20G26910 Glycine max GLYMA20G26910 N
Gorai.005G232500 Gossypium raimondii Gorai.005G232500 N
Gorai.007G056300 Gossypium raimondii Gorai.007G056300 N
Gorai.007G222000 Gossypium raimondii Gorai.007G222000 N
Gorai.008G081100 Gossypium raimondii Gorai.008G081100 N
Gorai.009G218800 Gossypium raimondii Gorai.009G218800 N
Gorai.010G025100 Gossypium raimondii Gorai.010G025100 N
MLOC_11838 Hordeum vulgare MLOC_11838 N
LPERR03G19360 Leersia perrieri LPERR03G19360 N
LPERR07G17890 Leersia perrieri LPERR07G17890 N
LPERR07G17900 Leersia perrieri LPERR07G17900 N
Lus10007758.g Linum usitatissimum Lus10007758.g N
Lus10011530.g Linum usitatissimum Lus10011530.g N
Lus10018697.g Linum usitatissimum Lus10018697.g N
Lus10019292.g Linum usitatissimum Lus10019292.g N
chr1.CM0088.550.nd Lotus japonicus chr1.CM0088.550.nd N
chr4.CM0128.270.nc Lotus japonicus chr4.CM0128.270.nc N
chr5.CM0200.600.nd Lotus japonicus chr5.CM0200.600.nd N
MDP0000139025 Malus domestica MDP0000139025 N
MDP0000151330 Malus domestica MDP0000151330 N
MDP0000239820 Malus domestica MDP0000239820 N
MDP0000247079 Malus domestica MDP0000247079 N
MDP0000261146 Malus domestica MDP0000261146 N
MDP0000487015 Malus domestica MDP0000487015 N
MDP0000747679 Malus domestica MDP0000747679 N
MDP0000794101 Malus domestica MDP0000794101 N
cassava22449.valid.m1 Manihot esculenta cassava22449.valid.m1 N
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N
cassava35733.valid.m1 Manihot esculenta cassava35733.valid.m1 N
cassava7497.valid.m1 Manihot esculenta cassava7497.valid.m1 N
cassava9459.m1 Manihot esculenta cassava9459.m1 N
MTR_1g106420 Medicago truncatula MTR_1g106420 N
MTR_4g095600 Medicago truncatula MTR_4g095600 N
MTR_5g015880 Medicago truncatula MTR_5g015880 N
mgf007319m Mimulus guttatus mgf007319m N
mgf016023m Mimulus guttatus mgf016023m N
mgf016064m Mimulus guttatus mgf016064m N
GSMUA_Achr3G18860_001 Musa acuminata GSMUA_Achr3G18860_001 N
GSMUA_Achr3G30130_001 Musa acuminata GSMUA_Achr3G30130_001 N
GSMUA_Achr4G14150_001 Musa acuminata GSMUA_Achr4G14150_001 N
GSMUA_Achr6G07770_001 Musa acuminata GSMUA_Achr6G07770_001 N
GSMUA_Achr7G26260_001 Musa acuminata GSMUA_Achr7G26260_001 N
OBART03G22820 Oryza barthii OBART03G22820 N
OBART07G20600 Oryza barthii OBART07G20600 N
OB03G31560 Oryza brachyantha OB03G31560 N
ORGLA03G0213800 Oryza glaberrima ORGLA03G0213800 N
ORGLA07G0157700 Oryza glaberrima ORGLA07G0157700 N
OGLUM03G23580 Oryza glumaepatula OGLUM03G23580 N
OGLUM07G20380 Oryza glumaepatula OGLUM07G20380 N
BGIOSGA010454 Oryza indica BGIOSGA010454 N
BGIOSGA026049 Oryza indica BGIOSGA026049 N
OLONG_015384 Oryza longistaminata OLONG_015384 N
OMERI03G20600 Oryza meridionalis OMERI03G20600 N
OMERI07G17270 Oryza meridionalis OMERI07G17270 N
ONIVA03G24370 Oryza nivara ONIVA03G24370 N
ONIVA07G19050 Oryza nivara ONIVA07G19050 N
OPUNC03G21330 Oryza punctata OPUNC03G21330 N
OPUNC07G19440 Oryza punctata OPUNC07G19440 N
OPUNC07G19460 Oryza punctata OPUNC07G19460 N
ORUFI03G23490 Oryza rufipogon ORUFI03G23490 N
ORUFI07G21460 Oryza rufipogon ORUFI07G21460 N
OS03G0445700 Oryza sativa OS03G0445700 N
OS07G0589000 Oryza sativa OS07G0589000 N
Pavir.Ba01055 Panicum virgatum Pavir.Ba01055 N
Pavir.Bb01170 Panicum virgatum Pavir.Bb01170 N
Pavir.Ia03080 Panicum virgatum Pavir.Ia03080 N
Pavir.J18418 Panicum virgatum Pavir.J18418 N
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N
estExt_gwp_gw1.C_2030014 Physcomitrella patens estExt_gwp_gw1.C_2030014 N
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N
POPTR_0001s30280 Populus trichocarpa POPTR_0001s30280 N
POPTR_0002s12020 Populus trichocarpa POPTR_0002s12020 N
POPTR_0005s18900 Populus trichocarpa POPTR_0005s18900 N
POPTR_0007s10010 Populus trichocarpa POPTR_0007s10010 N
POPTR_0009s09270 Populus trichocarpa POPTR_0009s09270 N
POPTR_0014s01770 Populus trichocarpa POPTR_0014s01770 N
Pm005389 Prunus mume Pm005389 N
Pm021281 Prunus mume Pm021281 N
PRUPE_ppa014964mg Prunus persica PRUPE_ppa014964mg N
PRUPE_ppa022806mg Prunus persica PRUPE_ppa022806mg N
28152.m000905 Ricinus communis 28152.m000905 N
29661.m000902 Ricinus communis 29661.m000902 N
30170.m013752 Ricinus communis 30170.m013752 N
SapurV1A.0019s0260 Salix purpurea SapurV1A.0019s0260 N
SapurV1A.0116s0210 Salix purpurea SapurV1A.0116s0210 N
SapurV1A.0336s0110 Salix purpurea SapurV1A.0336s0110 N
SapurV1A.0476s0230 Salix purpurea SapurV1A.0476s0230 N
SapurV1A.0845s0090 Salix purpurea SapurV1A.0845s0090 N
SapurV1A.2860s0030 Salix purpurea SapurV1A.2860s0030 N
SELMODRAFT_105005 Selaginella moellendorffii SELMODRAFT_105005 N
SELMODRAFT_27399 Selaginella moellendorffii SELMODRAFT_27399 N
SELMODRAFT_37532 Selaginella moellendorffii SELMODRAFT_37532 N
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N
SELMODRAFT_61520 Selaginella moellendorffii SELMODRAFT_61520 N
Si031011m.g Setaria italica Si031011m.g N
Solyc01g107190.2 Solanum lycopersicum Solyc01g107190.2 N
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N
Solyc04g077990.2 Solanum lycopersicum Solyc04g077990.2 N
PGSC0003DMG400021509 Solanum tuberosum PGSC0003DMG400021509 N
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N
Sb01g031790 Sorghum bicolor Sb01g031790 N
Sb02g038030 Sorghum bicolor Sb02g038030 N
TCM_000766 Theobroma cacao TCM_000766 N
TCM_007211 Theobroma cacao TCM_007211 N
TCM_034722 Theobroma cacao TCM_034722 N
Traes_2AS_942884399 Triticum aestivum Traes_2AS_942884399 N
Traes_2BS_5DF7F4FEE Triticum aestivum Traes_2BS_5DF7F4FEE N
Traes_4BL_D44ACD58E Triticum aestivum Traes_4BL_D44ACD58E N
VIT_03s0091g00670 Vitis vinifera VIT_03s0091g00670 N
VIT_07s0129g00330 Vitis vinifera VIT_07s0129g00330 N
VIT_18s0001g09250 Vitis vinifera VIT_18s0001g09250 N
GRMZM2G044902 Zea mays GRMZM2G044902 N
GRMZM2G177110 Zea mays GRMZM2G177110 N