Pavir.Ia03080 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.Ia03080 T247208_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia03080.1.p LOB 2 104

Links

Other LOB family TFs
Other Panicum virgatum TFs

210 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J18418 Panicum virgatum Pavir.J18418 N 0.990
Sb01g031790 Sorghum bicolor Sb01g031790 N 0.979
GRMZM2G044902 Zea mays GRMZM2G044902 N 0.969
LPERR03G19360 Leersia perrieri LPERR03G19360 N 0.959
OB03G31560 Oryza brachyantha OB03G31560 N 0.959
BGIOSGA010454 Oryza indica BGIOSGA010454 N 0.939
OBART03G22820 Oryza barthii OBART03G22820 N 0.939
OLONG_015384 Oryza longistaminata OLONG_015384 N 0.939
OMERI03G20600 Oryza meridionalis OMERI03G20600 N 0.939
ONIVA03G24370 Oryza nivara ONIVA03G24370 N 0.939
ORGLA03G0213800 Oryza glaberrima ORGLA03G0213800 N 0.939
ORUFI03G23490 Oryza rufipogon ORUFI03G23490 N 0.939
OS03G0445700 Oryza sativa OS03G0445700 N 0.939
OGLUM03G23580 Oryza glumaepatula OGLUM03G23580 N 0.929
OPUNC03G21330 Oryza punctata OPUNC03G21330 N 0.929
GSMUA_Achr3G18860_001 Musa acuminata GSMUA_Achr3G18860_001 N 0.908
PK25954.1 Cannabis sativa PK25954.1 N 0.870
Si031011m.g Setaria italica Si031011m.g N 0.867
Pavir.Bb01170 Panicum virgatum Pavir.Bb01170 N 0.867
BGIOSGA026049 Oryza indica BGIOSGA026049 N 0.866
OBART07G20600 Oryza barthii OBART07G20600 N 0.866
OGLUM07G20380 Oryza glumaepatula OGLUM07G20380 N 0.866
OMERI07G17270 Oryza meridionalis OMERI07G17270 N 0.866
ONIVA07G19050 Oryza nivara ONIVA07G19050 N 0.866
OPUNC07G19440 Oryza punctata OPUNC07G19440 N 0.866
OPUNC07G19460 Oryza punctata OPUNC07G19460 N 0.866
ORGLA07G0157700 Oryza glaberrima ORGLA07G0157700 N 0.866
ORUFI07G21460 Oryza rufipogon ORUFI07G21460 N 0.866
OS07G0589000 Oryza sativa OS07G0589000 N 0.866
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N 0.857
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N 0.857
Cla014228 Citrullus lanatus Cla014228 N 0.857
AMTR_s00137p00087340 Amborella trichopoda AMTR_s00137p00087340 N 0.847
LBD37 Arabidopsis thaliana AT5G67420 N 0.847
GLYMA05G22120 Glycine max GLYMA05G22120 N 0.847
GLYMA17G17540 Glycine max GLYMA17G17540 N 0.847
TCM_000766 Theobroma cacao TCM_000766 N 0.847
VIT_07s0129g00330 Vitis vinifera VIT_07s0129g00330 N 0.847
29661.m000902 Ricinus communis 29661.m000902 N 0.847
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N 0.847
cassava7497.valid.m1 Manihot esculenta cassava7497.valid.m1 N 0.847
Cucsa.103050 Cucumis sativus Cucsa.103050 N 0.847
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N 0.847
evm.TU.supercontig_6.40 Carica papaya evm.TU.supercontig_6.40 N 0.847
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N 0.847
Pavir.Ba01055 Panicum virgatum Pavir.Ba01055 N 0.847
PK03075.1 Cannabis sativa PK03075.1 N 0.845
LPERR07G17890 Leersia perrieri LPERR07G17890 N 0.839
LPERR07G17900 Leersia perrieri LPERR07G17900 N 0.838
Bo2g168020 Brassica oleracea Bo2g168020 N 0.837
Bo5g132850 Brassica oleracea Bo5g132850 N 0.837
Bo7g063630 Brassica oleracea Bo7g063630 N 0.837
Bo9g019150 Brassica oleracea Bo9g019150 N 0.837
Bra012164 Brassica rapa Bra012164 N 0.837
Bra031833 Brassica rapa Bra031833 N 0.837
Bra037847 Brassica rapa Bra037847 N 0.837
LBD37 Arabidopsis lyrata fgenesh2_kg.8__2670__AT5G67420.1 N 0.837
GSMUA_Achr3G30130_001 Musa acuminata GSMUA_Achr3G30130_001 N 0.837
GSMUA_Achr4G14150_001 Musa acuminata GSMUA_Achr4G14150_001 N 0.837
MTR_4g095600 Medicago truncatula MTR_4g095600 N 0.837
Sb02g038030 Sorghum bicolor Sb02g038030 N 0.837
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N 0.837
mgf016064m Mimulus guttatus mgf016064m N 0.837
Bostr.0568s0168 Boechera stricta Bostr.0568s0168 N 0.837
Cagra.0342s0030 Capsella grandiflora Cagra.0342s0030 N 0.837
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N 0.837
Gorai.007G222000 Gossypium raimondii Gorai.007G222000 N 0.837
Lus10011530.g Linum usitatissimum Lus10011530.g N 0.837
Lus10019292.g Linum usitatissimum Lus10019292.g N 0.837
Thhalv10004811m.g Eutrema salsugineum Thhalv10004811m.g N 0.837
PK29811.1 Cannabis sativa PK29811.1 N 0.837
chr4.CM0128.270.nc Lotus japonicus chr4.CM0128.270.nc N 0.837
LBD38 Arabidopsis thaliana AT3G49940 N 0.827
Bo1g003550 Brassica oleracea Bo1g003550 N 0.827
Bo7g099150 Brassica oleracea Bo7g099150 N 0.827
Bo8g079200 Brassica oleracea Bo8g079200 N 0.827
Bra011772 Brassica rapa Bra011772 N 0.827
Bra012913 Brassica rapa Bra012913 N 0.827
Bra036040 Brassica rapa Bra036040 N 0.827
BRADI1G22920 Brachypodium distachyon BRADI1G22920 N 0.827
GLYMA01G40010 Glycine max GLYMA01G40010 N 0.827
GLYMA11G05280 Glycine max GLYMA11G05280 N 0.827
POPTR_0005s18900 Populus trichocarpa POPTR_0005s18900 N 0.827
POPTR_0007s10010 Populus trichocarpa POPTR_0007s10010 N 0.827
LBD38 Arabidopsis lyrata scaffold_502015.1 N 0.827
Traes_2BS_5DF7F4FEE Triticum aestivum Traes_2BS_5DF7F4FEE N 0.827
Ca_02208 Cicer arietinum Ca_02208 N 0.827
Ca_09342 Cicer arietinum Ca_09342 N 0.827
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N 0.827
Aquca_042_00143 Aquilegia coerulea Aquca_042_00143 N 0.827
Cagra.10957s0002 Capsella grandiflora Cagra.10957s0002 N 0.827
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N 0.827
Carubv10005616m.g Capsella rubella Carubv10005616m.g N 0.827
Carubv10017944m.g Capsella rubella Carubv10017944m.g N 0.827
Carubv10027507m.g Capsella rubella Carubv10027507m.g N 0.827
gene05722-v1.0-hybrid Fragaria vesca gene05722-v1.0-hybrid N 0.827
SapurV1A.0116s0210 Salix purpurea SapurV1A.0116s0210 N 0.827
Thhalv10026086m.g Eutrema salsugineum Thhalv10026086m.g N 0.827
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N 0.825
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N 0.825
MDP0000151330 Malus domestica MDP0000151330 N 0.825
MDP0000239820 Malus domestica MDP0000239820 N 0.825
LBD39 Arabidopsis thaliana AT4G37540 N 0.816
LBD39 Arabidopsis lyrata fgenesh2_kg.7__297__AT4G37540.1 N 0.816
GSMUA_Achr7G26260_001 Musa acuminata GSMUA_Achr7G26260_001 N 0.816
MTR_5g015880 Medicago truncatula MTR_5g015880 N 0.816
Traes_2AS_942884399 Triticum aestivum Traes_2AS_942884399 N 0.816
Bostr.6864s0247 Boechera stricta Bostr.6864s0247 N 0.816
Bostr.7867s1612 Boechera stricta Bostr.7867s1612 N 0.816
Gorai.008G081100 Gossypium raimondii Gorai.008G081100 N 0.816
Thhalv10010666m.g Eutrema salsugineum Thhalv10010666m.g N 0.816
LjSGA_036652.1 Lotus japonicus LjSGA_036652.1 N 0.810
Bo7g118580 Brassica oleracea Bo7g118580 N 0.806
GRMZM2G177110 Zea mays GRMZM2G177110 N 0.806
GSMUA_Achr6G07770_001 Musa acuminata GSMUA_Achr6G07770_001 N 0.806
MLOC_11838 Hordeum vulgare MLOC_11838 N 0.806
SELMODRAFT_105005 Selaginella moellendorffii SELMODRAFT_105005 N 0.806
SELMODRAFT_27399 Selaginella moellendorffii SELMODRAFT_27399 N 0.806
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N 0.806
mgf007319m Mimulus guttatus mgf007319m N 0.806
Gorai.007G056300 Gossypium raimondii Gorai.007G056300 N 0.806
SapurV1A.0336s0110 Salix purpurea SapurV1A.0336s0110 N 0.806
Bra017831 Brassica rapa Bra017831 N 0.796
evm.TU.supercontig_21.100 Carica papaya evm.TU.supercontig_21.100 N 0.796
Pm002404 Prunus mume Pm002404 N 0.790
PK15647.1 Cannabis sativa PK15647.1 N 0.790
SELMODRAFT_61520 Selaginella moellendorffii SELMODRAFT_61520 N 0.786
evm.TU.supercontig_106.63 Carica papaya evm.TU.supercontig_106.63 N 0.786
GSMUA_Achr2G13440_001 Musa acuminata GSMUA_Achr2G13440_001 N 0.784
SELMODRAFT_37532 Selaginella moellendorffii SELMODRAFT_37532 N 0.784
AMTR_s00137p00051070 Amborella trichopoda AMTR_s00137p00051070 N 0.776
Bo9g018500 Brassica oleracea Bo9g018500 N 0.776
Cla020920 Citrullus lanatus Cla020920 N 0.776
estExt_gwp_gw1.C_2030014 Physcomitrella patens estExt_gwp_gw1.C_2030014 N 0.776
28152.m000905 Ricinus communis 28152.m000905 N 0.773
Cucsa.352730 Cucumis sativus Cucsa.352730 N 0.773
PRUPE_ppa014964mg Prunus persica PRUPE_ppa014964mg N 0.765
TCM_034722 Theobroma cacao TCM_034722 N 0.765
VIT_18s0001g09250 Vitis vinifera VIT_18s0001g09250 N 0.765
Pm005389 Prunus mume Pm005389 N 0.765
Gorai.009G218800 Gossypium raimondii Gorai.009G218800 N 0.765
Lus10018697.g Linum usitatissimum Lus10018697.g N 0.765
PK03977.1 Cannabis sativa PK03977.1 N 0.765
GLYMA20G26910 Glycine max GLYMA20G26910 N 0.763
cassava9459.m1 Manihot esculenta cassava9459.m1 N 0.763
POPTR_0002s12020 Populus trichocarpa POPTR_0002s12020 N 0.755
PRUPE_ppa022806mg Prunus persica PRUPE_ppa022806mg N 0.755
Pm021281 Prunus mume Pm021281 N 0.755
30170.m013752 Ricinus communis 30170.m013752 N 0.755
cassava22449.valid.m1 Manihot esculenta cassava22449.valid.m1 N 0.755
Ciclev10003746m.g Citrus clementina Ciclev10003746m.g N 0.755
Ciclev10029274m.g Citrus clementina Ciclev10029274m.g N 0.755
gene02557-v1.0-hybrid Fragaria vesca gene02557-v1.0-hybrid N 0.755
gene25541-v1.0-hybrid Fragaria vesca gene25541-v1.0-hybrid N 0.755
Gorai.010G025100 Gossypium raimondii Gorai.010G025100 N 0.755
orange1.1g029809m.g Citrus sinensis orange1.1g029809m.g N 0.755
SapurV1A.0845s0090 Salix purpurea SapurV1A.0845s0090 N 0.755
SapurV1A.2860s0030 Salix purpurea SapurV1A.2860s0030 N 0.755
GSMUA_Achr4G32550_001 Musa acuminata GSMUA_Achr4G32550_001 N 0.750
GLYMA10G40421 Glycine max GLYMA10G40421 N 0.745
OB03G33950 Oryza brachyantha OB03G33950 N 0.745
POPTR_0001s30280 Populus trichocarpa POPTR_0001s30280 N 0.745
POPTR_0009s09270 Populus trichocarpa POPTR_0009s09270 N 0.745
VIT_03s0091g00670 Vitis vinifera VIT_03s0091g00670 N 0.745
cassava35733.valid.m1 Manihot esculenta cassava35733.valid.m1 N 0.745
Eucgr.G01261 Eucalyptus grandis Eucgr.G01261 N 0.745
Gorai.005G232500 Gossypium raimondii Gorai.005G232500 N 0.745
Lus10007758.g Linum usitatissimum Lus10007758.g N 0.745
MDP0000487015 Malus domestica MDP0000487015 N 0.745
MDP0000747679 Malus domestica MDP0000747679 N 0.745
chr1.CM0088.550.nd Lotus japonicus chr1.CM0088.550.nd N 0.745
Eucgr.F00115 Eucalyptus grandis Eucgr.F00115 N 0.742
POPTR_0014s01770 Populus trichocarpa POPTR_0014s01770 N 0.737
BGIOSGA010258 Oryza indica BGIOSGA010258 N 0.735
OBART03G25820 Oryza barthii OBART03G25820 N 0.735
OGLUM03G26640 Oryza glumaepatula OGLUM03G26640 N 0.735
ONIVA03G26970 Oryza nivara ONIVA03G26970 N 0.735
OPUNC03G23160 Oryza punctata OPUNC03G23160 N 0.735
ORGLA03G0239300 Oryza glaberrima ORGLA03G0239300 N 0.735
ORUFI03G26700 Oryza rufipogon ORUFI03G26700 N 0.735
OS03G0609500 Oryza sativa OS03G0609500 N 0.735
PGSC0003DMG400025752 Solanum tuberosum PGSC0003DMG400025752 N 0.735
Solyc01g107190.2 Solanum lycopersicum Solyc01g107190.2 N 0.735
TCM_007211 Theobroma cacao TCM_007211 N 0.735
MDP0000139025 Malus domestica MDP0000139025 N 0.735
MDP0000794101 Malus domestica MDP0000794101 N 0.735
SapurV1A.0019s0260 Salix purpurea SapurV1A.0019s0260 N 0.735
GRMZM2G017319 Zea mays GRMZM2G017319 N 0.727
Si037275m.g Setaria italica Si037275m.g N 0.727
Pavir.J16587 Panicum virgatum Pavir.J16587 N 0.727
Traes_4BL_D44ACD58E Triticum aestivum Traes_4BL_D44ACD58E N 0.725
BRADI1G14780 Brachypodium distachyon BRADI1G14780 N 0.724
LPERR03G21440 Leersia perrieri LPERR03G21440 N 0.724
mgf016023m Mimulus guttatus mgf016023m N 0.722
MLOC_51325 Hordeum vulgare MLOC_51325 N 0.717
Traes_4BS_3BCDF0612 Triticum aestivum Traes_4BS_3BCDF0612 N 0.717
Traes_4DS_9575221BB Triticum aestivum Traes_4DS_9575221BB N 0.717
SapurV1A.0476s0230 Salix purpurea SapurV1A.0476s0230 N 0.717
GLYMA14G09750 Glycine max GLYMA14G09750 N 0.714
Si022660m.g Setaria italica Si022660m.g N 0.714
Eucgr.G02321 Eucalyptus grandis Eucgr.G02321 N 0.714
F775_13634 Aegilops tauschii F775_13634 N 0.708
Traes_4AL_7241716B6 Triticum aestivum Traes_4AL_7241716B6 N 0.707
TRIUR3_28321 Triticum urartu TRIUR3_28321 N 0.707
MTR_1g106420 Medicago truncatula MTR_1g106420 N 0.704
OLONG_008015 Oryza longistaminata OLONG_008015 N 0.704
Sb03g007270 Sorghum bicolor Sb03g007270 N 0.704
Sb09g030780 Sorghum bicolor Sb09g030780 N 0.704
chr5.CM0200.600.nd Lotus japonicus chr5.CM0200.600.nd N 0.704
GRMZM2G132693 Zea mays GRMZM2G132693 N 0.701