Carubv10027507m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10027507m.g T246791_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027507m LOB 2 104

Links

Other LOB family TFs
Other Capsella rubella TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g168020 Brassica oleracea Bo2g168020 N 0.990
LBD37 Arabidopsis lyrata fgenesh2_kg.8__2670__AT5G67420.1 N 0.990
Bostr.0568s0168 Boechera stricta Bostr.0568s0168 N 0.990
Cagra.0342s0030 Capsella grandiflora Cagra.0342s0030 N 0.990
Thhalv10004811m.g Eutrema salsugineum Thhalv10004811m.g N 0.990
LBD37 Arabidopsis thaliana AT5G67420 N 0.980
Bo5g132850 Brassica oleracea Bo5g132850 N 0.980
Bo7g063630 Brassica oleracea Bo7g063630 N 0.980
Bo9g019150 Brassica oleracea Bo9g019150 N 0.980
Bra012164 Brassica rapa Bra012164 N 0.980
Bra031833 Brassica rapa Bra031833 N 0.980
Bra037847 Brassica rapa Bra037847 N 0.969
LBD38 Arabidopsis lyrata scaffold_502015.1 N 0.939
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N 0.939
Carubv10017944m.g Capsella rubella Carubv10017944m.g N 0.939
LBD38 Arabidopsis thaliana AT3G49940 N 0.929
Bo8g079200 Brassica oleracea Bo8g079200 N 0.929
Thhalv10010666m.g Eutrema salsugineum Thhalv10010666m.g N 0.929
Bo7g099150 Brassica oleracea Bo7g099150 N 0.918
Bra036040 Brassica rapa Bra036040 N 0.918
Bostr.6864s0247 Boechera stricta Bostr.6864s0247 N 0.918
Bra012913 Brassica rapa Bra012913 N 0.908
TCM_000766 Theobroma cacao TCM_000766 N 0.898
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N 0.898
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N 0.898
evm.TU.supercontig_6.40 Carica papaya evm.TU.supercontig_6.40 N 0.898
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N 0.898
PK03075.1 Cannabis sativa PK03075.1 N 0.897
Bo1g003550 Brassica oleracea Bo1g003550 N 0.888
Bra011772 Brassica rapa Bra011772 N 0.888
GLYMA17G17540 Glycine max GLYMA17G17540 N 0.888
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N 0.888
POPTR_0007s10010 Populus trichocarpa POPTR_0007s10010 N 0.888
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N 0.888
Cla014228 Citrullus lanatus Cla014228 N 0.888
29661.m000902 Ricinus communis 29661.m000902 N 0.888
cassava7497.valid.m1 Manihot esculenta cassava7497.valid.m1 N 0.888
Aquca_042_00143 Aquilegia coerulea Aquca_042_00143 N 0.888
Cagra.10957s0002 Capsella grandiflora Cagra.10957s0002 N 0.888
Carubv10005616m.g Capsella rubella Carubv10005616m.g N 0.888
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N 0.888
gene05722-v1.0-hybrid Fragaria vesca gene05722-v1.0-hybrid N 0.888
Gorai.007G222000 Gossypium raimondii Gorai.007G222000 N 0.888
SapurV1A.0116s0210 Salix purpurea SapurV1A.0116s0210 N 0.888
Thhalv10026086m.g Eutrema salsugineum Thhalv10026086m.g N 0.888
AMTR_s00137p00087340 Amborella trichopoda AMTR_s00137p00087340 N 0.878
LBD39 Arabidopsis thaliana AT4G37540 N 0.878
LBD39 Arabidopsis lyrata fgenesh2_kg.7__297__AT4G37540.1 N 0.878
GLYMA05G22120 Glycine max GLYMA05G22120 N 0.878
MTR_4g095600 Medicago truncatula MTR_4g095600 N 0.878
POPTR_0005s18900 Populus trichocarpa POPTR_0005s18900 N 0.878
Cucsa.103050 Cucumis sativus Cucsa.103050 N 0.878
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N 0.878
GLYMA01G40010 Glycine max GLYMA01G40010 N 0.867
GLYMA11G05280 Glycine max GLYMA11G05280 N 0.867
MTR_5g015880 Medicago truncatula MTR_5g015880 N 0.867
VIT_07s0129g00330 Vitis vinifera VIT_07s0129g00330 N 0.867
Ca_09342 Cicer arietinum Ca_09342 N 0.867
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N 0.867
Bostr.7867s1612 Boechera stricta Bostr.7867s1612 N 0.867
Gorai.008G081100 Gossypium raimondii Gorai.008G081100 N 0.867
Lus10011530.g Linum usitatissimum Lus10011530.g N 0.867
Lus10019292.g Linum usitatissimum Lus10019292.g N 0.867
chr4.CM0128.270.nc Lotus japonicus chr4.CM0128.270.nc N 0.867
BGIOSGA010454 Oryza indica BGIOSGA010454 N 0.857
OBART03G22820 Oryza barthii OBART03G22820 N 0.857
OGLUM03G23580 Oryza glumaepatula OGLUM03G23580 N 0.857
OLONG_015384 Oryza longistaminata OLONG_015384 N 0.857
OMERI03G20600 Oryza meridionalis OMERI03G20600 N 0.857
ONIVA03G24370 Oryza nivara ONIVA03G24370 N 0.857
OPUNC03G21330 Oryza punctata OPUNC03G21330 N 0.857
ORGLA03G0213800 Oryza glaberrima ORGLA03G0213800 N 0.857
ORUFI03G23490 Oryza rufipogon ORUFI03G23490 N 0.857
OS03G0445700 Oryza sativa OS03G0445700 N 0.857
Ca_02208 Cicer arietinum Ca_02208 N 0.857
mgf016064m Mimulus guttatus mgf016064m N 0.857
SapurV1A.0336s0110 Salix purpurea SapurV1A.0336s0110 N 0.857
GSMUA_Achr3G18860_001 Musa acuminata GSMUA_Achr3G18860_001 N 0.847
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N 0.847
Gorai.007G056300 Gossypium raimondii Gorai.007G056300 N 0.847
LjSGA_036652.1 Lotus japonicus LjSGA_036652.1 N 0.845
LPERR07G17890 Leersia perrieri LPERR07G17890 N 0.839
Bo7g118580 Brassica oleracea Bo7g118580 N 0.837
Bo9g018500 Brassica oleracea Bo9g018500 N 0.837
Bra017831 Brassica rapa Bra017831 N 0.837
GSMUA_Achr3G30130_001 Musa acuminata GSMUA_Achr3G30130_001 N 0.837
GSMUA_Achr4G14150_001 Musa acuminata GSMUA_Achr4G14150_001 N 0.837
SELMODRAFT_105005 Selaginella moellendorffii SELMODRAFT_105005 N 0.837
SELMODRAFT_27399 Selaginella moellendorffii SELMODRAFT_27399 N 0.837
Pavir.J18418 Panicum virgatum Pavir.J18418 N 0.837
PK29811.1 Cannabis sativa PK29811.1 N 0.837
Sb01g031790 Sorghum bicolor Sb01g031790 N 0.835
AMTR_s00137p00051070 Amborella trichopoda AMTR_s00137p00051070 N 0.827
GRMZM2G044902 Zea mays GRMZM2G044902 N 0.827
LPERR03G19360 Leersia perrieri LPERR03G19360 N 0.827
OB03G31560 Oryza brachyantha OB03G31560 N 0.827
Ciclev10029274m.g Citrus clementina Ciclev10029274m.g N 0.827
Pavir.Ia03080 Panicum virgatum Pavir.Ia03080 N 0.827
PK15647.1 Cannabis sativa PK15647.1 N 0.827
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N 0.825
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N 0.825
MDP0000151330 Malus domestica MDP0000151330 N 0.825
MDP0000239820 Malus domestica MDP0000239820 N 0.825
GSMUA_Achr7G26260_001 Musa acuminata GSMUA_Achr7G26260_001 N 0.816
evm.TU.supercontig_21.100 Carica papaya evm.TU.supercontig_21.100 N 0.816
Si031011m.g Setaria italica Si031011m.g N 0.806
Pm002404 Prunus mume Pm002404 N 0.806
30170.m013752 Ricinus communis 30170.m013752 N 0.806
cassava22449.valid.m1 Manihot esculenta cassava22449.valid.m1 N 0.806
estExt_gwp_gw1.C_2030014 Physcomitrella patens estExt_gwp_gw1.C_2030014 N 0.806
evm.TU.supercontig_106.63 Carica papaya evm.TU.supercontig_106.63 N 0.806
Pavir.Bb01170 Panicum virgatum Pavir.Bb01170 N 0.806
Sb02g038030 Sorghum bicolor Sb02g038030 N 0.796
cassava35733.valid.m1 Manihot esculenta cassava35733.valid.m1 N 0.796
mgf007319m Mimulus guttatus mgf007319m N 0.796
SapurV1A.0845s0090 Salix purpurea SapurV1A.0845s0090 N 0.796
SapurV1A.2860s0030 Salix purpurea SapurV1A.2860s0030 N 0.796
VIT_18s0001g09250 Vitis vinifera VIT_18s0001g09250 N 0.786
gene25541-v1.0-hybrid Fragaria vesca gene25541-v1.0-hybrid N 0.786
Pavir.Ba01055 Panicum virgatum Pavir.Ba01055 N 0.786
BGIOSGA026049 Oryza indica BGIOSGA026049 N 0.784
OBART07G20600 Oryza barthii OBART07G20600 N 0.784
OGLUM07G20380 Oryza glumaepatula OGLUM07G20380 N 0.784
OMERI07G17270 Oryza meridionalis OMERI07G17270 N 0.784
ONIVA07G19050 Oryza nivara ONIVA07G19050 N 0.784
OPUNC07G19440 Oryza punctata OPUNC07G19440 N 0.784
OPUNC07G19460 Oryza punctata OPUNC07G19460 N 0.784
ORGLA07G0157700 Oryza glaberrima ORGLA07G0157700 N 0.784
ORUFI07G21460 Oryza rufipogon ORUFI07G21460 N 0.784
OS07G0589000 Oryza sativa OS07G0589000 N 0.784
PK25954.1 Cannabis sativa PK25954.1 N 0.783
POPTR_0014s01770 Populus trichocarpa POPTR_0014s01770 N 0.778
SapurV1A.0476s0230 Salix purpurea SapurV1A.0476s0230 N 0.778
MLOC_11838 Hordeum vulgare MLOC_11838 N 0.776
PGSC0003DMG400025752 Solanum tuberosum PGSC0003DMG400025752 N 0.776
PRUPE_ppa014964mg Prunus persica PRUPE_ppa014964mg N 0.776
PRUPE_ppa022806mg Prunus persica PRUPE_ppa022806mg N 0.776
SELMODRAFT_61520 Selaginella moellendorffii SELMODRAFT_61520 N 0.776
Solyc01g107190.2 Solanum lycopersicum Solyc01g107190.2 N 0.776
Traes_2BS_5DF7F4FEE Triticum aestivum Traes_2BS_5DF7F4FEE N 0.776
VIT_03s0091g00670 Vitis vinifera VIT_03s0091g00670 N 0.776
Pm005389 Prunus mume Pm005389 N 0.776
Pm021281 Prunus mume Pm021281 N 0.776
BRADI1G22920 Brachypodium distachyon BRADI1G22920 N 0.765
GSMUA_Achr6G07770_001 Musa acuminata GSMUA_Achr6G07770_001 N 0.765
POPTR_0002s12020 Populus trichocarpa POPTR_0002s12020 N 0.765
Traes_2AS_942884399 Triticum aestivum Traes_2AS_942884399 N 0.765
Gorai.010G025100 Gossypium raimondii Gorai.010G025100 N 0.765
MDP0000139025 Malus domestica MDP0000139025 N 0.765
GSMUA_Achr2G13440_001 Musa acuminata GSMUA_Achr2G13440_001 N 0.763
SELMODRAFT_37532 Selaginella moellendorffii SELMODRAFT_37532 N 0.763
28152.m000905 Ricinus communis 28152.m000905 N 0.763
POPTR_0001s30280 Populus trichocarpa POPTR_0001s30280 N 0.755
POPTR_0009s09270 Populus trichocarpa POPTR_0009s09270 N 0.755
TCM_007211 Theobroma cacao TCM_007211 N 0.755
Gorai.009G218800 Gossypium raimondii Gorai.009G218800 N 0.755
MDP0000794101 Malus domestica MDP0000794101 N 0.755
SapurV1A.0019s0260 Salix purpurea SapurV1A.0019s0260 N 0.755
PK03977.1 Cannabis sativa PK03977.1 N 0.755
GLYMA20G26910 Glycine max GLYMA20G26910 N 0.753
mgf016023m Mimulus guttatus mgf016023m N 0.753
GRMZM2G177110 Zea mays GRMZM2G177110 N 0.745
OB03G33950 Oryza brachyantha OB03G33950 N 0.745
Ciclev10003746m.g Citrus clementina Ciclev10003746m.g N 0.745
Gorai.005G232500 Gossypium raimondii Gorai.005G232500 N 0.745
orange1.1g029809m.g Citrus sinensis orange1.1g029809m.g N 0.745
cassava9459.m1 Manihot esculenta cassava9459.m1 N 0.742
orange1.1g029970m.g Citrus sinensis orange1.1g029970m.g N 0.741
GSMUA_Achr4G32550_001 Musa acuminata GSMUA_Achr4G32550_001 N 0.740
BGIOSGA010258 Oryza indica BGIOSGA010258 N 0.735
GLYMA10G40421 Glycine max GLYMA10G40421 N 0.735
GLYMA14G09750 Glycine max GLYMA14G09750 N 0.735
OBART03G25820 Oryza barthii OBART03G25820 N 0.735
OGLUM03G26640 Oryza glumaepatula OGLUM03G26640 N 0.735
ONIVA03G26970 Oryza nivara ONIVA03G26970 N 0.735
OPUNC03G23160 Oryza punctata OPUNC03G23160 N 0.735
ORGLA03G0239300 Oryza glaberrima ORGLA03G0239300 N 0.735
ORUFI03G26700 Oryza rufipogon ORUFI03G26700 N 0.735
OS03G0609500 Oryza sativa OS03G0609500 N 0.735
Sb03g007270 Sorghum bicolor Sb03g007270 N 0.735
Eucgr.G01261 Eucalyptus grandis Eucgr.G01261 N 0.735
gene02557-v1.0-hybrid Fragaria vesca gene02557-v1.0-hybrid N 0.735
Lus10007758.g Linum usitatissimum Lus10007758.g N 0.735
Lus10018697.g Linum usitatissimum Lus10018697.g N 0.735
MDP0000247079 Malus domestica MDP0000247079 N 0.735
MDP0000261146 Malus domestica MDP0000261146 N 0.735
MDP0000487015 Malus domestica MDP0000487015 N 0.735
MDP0000747679 Malus domestica MDP0000747679 N 0.735
GRMZM2G132693 Zea mays GRMZM2G132693 N 0.732
mgf017790m Mimulus guttatus mgf017790m N 0.729
GRMZM2G017319 Zea mays GRMZM2G017319 N 0.727
Si037275m.g Setaria italica Si037275m.g N 0.727
Traes_4AL_7241716B6 Triticum aestivum Traes_4AL_7241716B6 N 0.727
TRIUR3_28321 Triticum urartu TRIUR3_28321 N 0.727
Pavir.J16587 Panicum virgatum Pavir.J16587 N 0.727
Traes_4BL_D44ACD58E Triticum aestivum Traes_4BL_D44ACD58E N 0.725
BRADI1G14780 Brachypodium distachyon BRADI1G14780 N 0.724
LPERR03G21440 Leersia perrieri LPERR03G21440 N 0.724
TCM_034722 Theobroma cacao TCM_034722 N 0.724
Cla020920 Citrullus lanatus Cla020920 N 0.724
chr1.CM0088.550.nd Lotus japonicus chr1.CM0088.550.nd N 0.724
Cucsa.352730 Cucumis sativus Cucsa.352730 N 0.722
MLOC_51325 Hordeum vulgare MLOC_51325 N 0.717
Traes_4BS_3BCDF0612 Triticum aestivum Traes_4BS_3BCDF0612 N 0.717
Traes_4DS_9575221BB Triticum aestivum Traes_4DS_9575221BB N 0.717
BGIOSGA002703 Oryza indica BGIOSGA002703 N 0.714
LPERR01G01830 Leersia perrieri LPERR01G01830 N 0.714
MTR_1g106420 Medicago truncatula MTR_1g106420 N 0.714
OB01G11830 Oryza brachyantha OB01G11830 N 0.714
OBART01G01940 Oryza barthii OBART01G01940 N 0.714
OGLUM01G02100 Oryza glumaepatula OGLUM01G02100 N 0.714
ONIVA01G02110 Oryza nivara ONIVA01G02110 N 0.714
OPUNC01G01670 Oryza punctata OPUNC01G01670 N 0.714
ORGLA01G0016600 Oryza glaberrima ORGLA01G0016600 N 0.714
ORUFI01G02010 Oryza rufipogon ORUFI01G02010 N 0.714
Si002412m.g Setaria italica Si002412m.g N 0.714
Pavir.Ea00650 Panicum virgatum Pavir.Ea00650 N 0.714
Pavir.J11724 Panicum virgatum Pavir.J11724 N 0.714
GLYMA17G35440 Glycine max GLYMA17G35440 N 0.711
Eucgr.F00115 Eucalyptus grandis Eucgr.F00115 N 0.711
OLONG_008015 Oryza longistaminata OLONG_008015 N 0.704
OMERI01G01380 Oryza meridionalis OMERI01G01380 N 0.704
TCM_009888 Theobroma cacao TCM_009888 N 0.704
Gorai.005G190300 Gossypium raimondii Gorai.005G190300 N 0.704
chr5.CM0200.600.nd Lotus japonicus chr5.CM0200.600.nd N 0.704