Bra011772 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra011772 T245041_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra011772.1-P LOB 2 104

Links

Other LOB family TFs
Other Brassica rapa TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g003550 Brassica oleracea Bo1g003550 N 0.990
Thhalv10026086m.g Eutrema salsugineum Thhalv10026086m.g N 0.990
Cagra.10957s0002 Capsella grandiflora Cagra.10957s0002 N 0.969
Carubv10005616m.g Capsella rubella Carubv10005616m.g N 0.969
LBD39 Arabidopsis thaliana AT4G37540 N 0.959
LBD39 Arabidopsis lyrata fgenesh2_kg.7__297__AT4G37540.1 N 0.959
Bostr.7867s1612 Boechera stricta Bostr.7867s1612 N 0.959
29661.m000902 Ricinus communis 29661.m000902 N 0.949
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N 0.949
cassava7497.valid.m1 Manihot esculenta cassava7497.valid.m1 N 0.949
Bo7g118580 Brassica oleracea Bo7g118580 N 0.939
Bo9g018500 Brassica oleracea Bo9g018500 N 0.939
GLYMA17G17540 Glycine max GLYMA17G17540 N 0.939
TCM_000766 Theobroma cacao TCM_000766 N 0.939
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N 0.939
Lus10011530.g Linum usitatissimum Lus10011530.g N 0.939
Lus10019292.g Linum usitatissimum Lus10019292.g N 0.939
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N 0.939
MTR_4g095600 Medicago truncatula MTR_4g095600 N 0.929
Cla014228 Citrullus lanatus Cla014228 N 0.929
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N 0.929
evm.TU.supercontig_6.40 Carica papaya evm.TU.supercontig_6.40 N 0.929
Gorai.007G222000 Gossypium raimondii Gorai.007G222000 N 0.929
Bra017831 Brassica rapa Bra017831 N 0.918
GLYMA01G40010 Glycine max GLYMA01G40010 N 0.918
GLYMA05G22120 Glycine max GLYMA05G22120 N 0.918
GLYMA11G05280 Glycine max GLYMA11G05280 N 0.918
POPTR_0005s18900 Populus trichocarpa POPTR_0005s18900 N 0.918
POPTR_0007s10010 Populus trichocarpa POPTR_0007s10010 N 0.918
VIT_07s0129g00330 Vitis vinifera VIT_07s0129g00330 N 0.918
Ca_09342 Cicer arietinum Ca_09342 N 0.918
Cucsa.103050 Cucumis sativus Cucsa.103050 N 0.918
mgf016064m Mimulus guttatus mgf016064m N 0.918
gene05722-v1.0-hybrid Fragaria vesca gene05722-v1.0-hybrid N 0.918
Gorai.007G056300 Gossypium raimondii Gorai.007G056300 N 0.918
SapurV1A.0116s0210 Salix purpurea SapurV1A.0116s0210 N 0.918
PK03075.1 Cannabis sativa PK03075.1 N 0.918
chr4.CM0128.270.nc Lotus japonicus chr4.CM0128.270.nc N 0.918
Bo7g063630 Brassica oleracea Bo7g063630 N 0.908
Bo7g099150 Brassica oleracea Bo7g099150 N 0.908
Bra012164 Brassica rapa Bra012164 N 0.908
Bra012913 Brassica rapa Bra012913 N 0.908
Bra037847 Brassica rapa Bra037847 N 0.908
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N 0.908
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N 0.908
Aquca_042_00143 Aquilegia coerulea Aquca_042_00143 N 0.908
Gorai.008G081100 Gossypium raimondii Gorai.008G081100 N 0.908
AMTR_s00137p00087340 Amborella trichopoda AMTR_s00137p00087340 N 0.898
LBD38 Arabidopsis thaliana AT3G49940 N 0.898
Bo2g168020 Brassica oleracea Bo2g168020 N 0.898
Bo5g132850 Brassica oleracea Bo5g132850 N 0.898
Bo9g019150 Brassica oleracea Bo9g019150 N 0.898
Bra031833 Brassica rapa Bra031833 N 0.898
LBD37 Arabidopsis lyrata fgenesh2_kg.8__2670__AT5G67420.1 N 0.898
MTR_5g015880 Medicago truncatula MTR_5g015880 N 0.898
Ca_02208 Cicer arietinum Ca_02208 N 0.898
Bostr.0568s0168 Boechera stricta Bostr.0568s0168 N 0.898
Cagra.0342s0030 Capsella grandiflora Cagra.0342s0030 N 0.898
SapurV1A.0336s0110 Salix purpurea SapurV1A.0336s0110 N 0.898
Thhalv10004811m.g Eutrema salsugineum Thhalv10004811m.g N 0.898
LBD37 Arabidopsis thaliana AT5G67420 N 0.888
Bo8g079200 Brassica oleracea Bo8g079200 N 0.888
Bra036040 Brassica rapa Bra036040 N 0.888
GSMUA_Achr3G18860_001 Musa acuminata GSMUA_Achr3G18860_001 N 0.888
LBD38 Arabidopsis lyrata scaffold_502015.1 N 0.888
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N 0.888
Carubv10017944m.g Capsella rubella Carubv10017944m.g N 0.888
Carubv10027507m.g Capsella rubella Carubv10027507m.g N 0.888
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N 0.878
Bostr.6864s0247 Boechera stricta Bostr.6864s0247 N 0.878
Thhalv10010666m.g Eutrema salsugineum Thhalv10010666m.g N 0.878
GSMUA_Achr3G30130_001 Musa acuminata GSMUA_Achr3G30130_001 N 0.867
SELMODRAFT_105005 Selaginella moellendorffii SELMODRAFT_105005 N 0.867
SELMODRAFT_27399 Selaginella moellendorffii SELMODRAFT_27399 N 0.867
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N 0.867
30170.m013752 Ricinus communis 30170.m013752 N 0.857
cassava22449.valid.m1 Manihot esculenta cassava22449.valid.m1 N 0.857
MDP0000151330 Malus domestica MDP0000151330 N 0.857
MDP0000239820 Malus domestica MDP0000239820 N 0.857
BGIOSGA010454 Oryza indica BGIOSGA010454 N 0.847
GRMZM2G044902 Zea mays GRMZM2G044902 N 0.847
GSMUA_Achr4G14150_001 Musa acuminata GSMUA_Achr4G14150_001 N 0.847
GSMUA_Achr7G26260_001 Musa acuminata GSMUA_Achr7G26260_001 N 0.847
OBART03G22820 Oryza barthii OBART03G22820 N 0.847
OGLUM03G23580 Oryza glumaepatula OGLUM03G23580 N 0.847
OLONG_015384 Oryza longistaminata OLONG_015384 N 0.847
OMERI03G20600 Oryza meridionalis OMERI03G20600 N 0.847
ONIVA03G24370 Oryza nivara ONIVA03G24370 N 0.847
OPUNC03G21330 Oryza punctata OPUNC03G21330 N 0.847
ORGLA03G0213800 Oryza glaberrima ORGLA03G0213800 N 0.847
ORUFI03G23490 Oryza rufipogon ORUFI03G23490 N 0.847
OS03G0445700 Oryza sativa OS03G0445700 N 0.847
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N 0.847
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N 0.847
VIT_18s0001g09250 Vitis vinifera VIT_18s0001g09250 N 0.847
cassava35733.valid.m1 Manihot esculenta cassava35733.valid.m1 N 0.847
LjSGA_036652.1 Lotus japonicus LjSGA_036652.1 N 0.845
PRUPE_ppa014964mg Prunus persica PRUPE_ppa014964mg N 0.837
Pm005389 Prunus mume Pm005389 N 0.837
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N 0.837
Pavir.J18418 Panicum virgatum Pavir.J18418 N 0.837
Sb01g031790 Sorghum bicolor Sb01g031790 N 0.835
GLYMA14G09750 Glycine max GLYMA14G09750 N 0.827
LPERR03G19360 Leersia perrieri LPERR03G19360 N 0.827
OB03G31560 Oryza brachyantha OB03G31560 N 0.827
Si031011m.g Setaria italica Si031011m.g N 0.827
mgf007319m Mimulus guttatus mgf007319m N 0.827
evm.TU.supercontig_106.63 Carica papaya evm.TU.supercontig_106.63 N 0.827
evm.TU.supercontig_21.100 Carica papaya evm.TU.supercontig_21.100 N 0.827
Pavir.Bb01170 Panicum virgatum Pavir.Bb01170 N 0.827
Pavir.Ia03080 Panicum virgatum Pavir.Ia03080 N 0.827
AMTR_s00137p00051070 Amborella trichopoda AMTR_s00137p00051070 N 0.816
POPTR_0002s12020 Populus trichocarpa POPTR_0002s12020 N 0.816
POPTR_0014s01770 Populus trichocarpa POPTR_0014s01770 N 0.816
VIT_03s0091g00670 Vitis vinifera VIT_03s0091g00670 N 0.816
estExt_gwp_gw1.C_2030014 Physcomitrella patens estExt_gwp_gw1.C_2030014 N 0.816
gene02557-v1.0-hybrid Fragaria vesca gene02557-v1.0-hybrid N 0.816
Pavir.Ba01055 Panicum virgatum Pavir.Ba01055 N 0.816
SapurV1A.0845s0090 Salix purpurea SapurV1A.0845s0090 N 0.816
SapurV1A.2860s0030 Salix purpurea SapurV1A.2860s0030 N 0.816
PK03977.1 Cannabis sativa PK03977.1 N 0.816
PK15647.1 Cannabis sativa PK15647.1 N 0.815
Sb02g038030 Sorghum bicolor Sb02g038030 N 0.806
Ciclev10003746m.g Citrus clementina Ciclev10003746m.g N 0.806
orange1.1g029809m.g Citrus sinensis orange1.1g029809m.g N 0.806
SapurV1A.0476s0230 Salix purpurea SapurV1A.0476s0230 N 0.806
BGIOSGA026049 Oryza indica BGIOSGA026049 N 0.796
BRADI1G22920 Brachypodium distachyon BRADI1G22920 N 0.796
GLYMA17G35440 Glycine max GLYMA17G35440 N 0.796
OBART07G20600 Oryza barthii OBART07G20600 N 0.796
OGLUM07G20380 Oryza glumaepatula OGLUM07G20380 N 0.796
OMERI07G17270 Oryza meridionalis OMERI07G17270 N 0.796
ONIVA07G19050 Oryza nivara ONIVA07G19050 N 0.796
OPUNC07G19440 Oryza punctata OPUNC07G19440 N 0.796
OPUNC07G19460 Oryza punctata OPUNC07G19460 N 0.796
ORGLA07G0157700 Oryza glaberrima ORGLA07G0157700 N 0.796
ORUFI07G21460 Oryza rufipogon ORUFI07G21460 N 0.796
OS07G0589000 Oryza sativa OS07G0589000 N 0.796
PGSC0003DMG400025752 Solanum tuberosum PGSC0003DMG400025752 N 0.796
Solyc01g107190.2 Solanum lycopersicum Solyc01g107190.2 N 0.796
Gorai.010G025100 Gossypium raimondii Gorai.010G025100 N 0.796
MDP0000487015 Malus domestica MDP0000487015 N 0.796
MDP0000747679 Malus domestica MDP0000747679 N 0.796
MDP0000794101 Malus domestica MDP0000794101 N 0.796
GSMUA_Achr6G07770_001 Musa acuminata GSMUA_Achr6G07770_001 N 0.786
Traes_2BS_5DF7F4FEE Triticum aestivum Traes_2BS_5DF7F4FEE N 0.786
Cla020920 Citrullus lanatus Cla020920 N 0.786
Ciclev10029274m.g Citrus clementina Ciclev10029274m.g N 0.786
Gorai.009G218800 Gossypium raimondii Gorai.009G218800 N 0.786
PRUPE_ppa022806mg Prunus persica PRUPE_ppa022806mg N 0.776
TCM_034722 Theobroma cacao TCM_034722 N 0.776
Traes_2AS_942884399 Triticum aestivum Traes_2AS_942884399 N 0.776
Pm021281 Prunus mume Pm021281 N 0.776
28152.m000905 Ricinus communis 28152.m000905 N 0.776
cassava9459.m1 Manihot esculenta cassava9459.m1 N 0.776
GRMZM2G177110 Zea mays GRMZM2G177110 N 0.765
MLOC_11838 Hordeum vulgare MLOC_11838 N 0.765
POPTR_0009s09270 Populus trichocarpa POPTR_0009s09270 N 0.765
TCM_007211 Theobroma cacao TCM_007211 N 0.765
Cucsa.352730 Cucumis sativus Cucsa.352730 N 0.765
Eucgr.G01261 Eucalyptus grandis Eucgr.G01261 N 0.765
gene25541-v1.0-hybrid Fragaria vesca gene25541-v1.0-hybrid N 0.765
Lus10007758.g Linum usitatissimum Lus10007758.g N 0.765
Lus10018697.g Linum usitatissimum Lus10018697.g N 0.765
MDP0000139025 Malus domestica MDP0000139025 N 0.765
SapurV1A.0019s0260 Salix purpurea SapurV1A.0019s0260 N 0.765
SELMODRAFT_61520 Selaginella moellendorffii SELMODRAFT_61520 N 0.755
mgf016023m Mimulus guttatus mgf016023m N 0.755
Gorai.005G232500 Gossypium raimondii Gorai.005G232500 N 0.755
Eucgr.F00115 Eucalyptus grandis Eucgr.F00115 N 0.753
GLYMA20G26910 Glycine max GLYMA20G26910 N 0.745
POPTR_0001s30280 Populus trichocarpa POPTR_0001s30280 N 0.745
SELMODRAFT_37532 Selaginella moellendorffii SELMODRAFT_37532 N 0.745
GSMUA_Achr4G32550_001 Musa acuminata GSMUA_Achr4G32550_001 N 0.740
GLYMA10G40421 Glycine max GLYMA10G40421 N 0.735
GSMUA_Achr2G13440_001 Musa acuminata GSMUA_Achr2G13440_001 N 0.735
Solyc04g077990.2 Solanum lycopersicum Solyc04g077990.2 N 0.735
MDP0000247079 Malus domestica MDP0000247079 N 0.735
MDP0000261146 Malus domestica MDP0000261146 N 0.735
Bo2g055410 Brassica oleracea Bo2g055410 N 0.724
PGSC0003DMG400021509 Solanum tuberosum PGSC0003DMG400021509 N 0.724
chr1.CM0088.550.nd Lotus japonicus chr1.CM0088.550.nd N 0.724
LBD40 Arabidopsis thaliana AT1G67100 N 0.714
GLYMA13G07590 Glycine max GLYMA13G07590 N 0.714
OB03G33950 Oryza brachyantha OB03G33950 N 0.714
POPTR_0004s09920 Populus trichocarpa POPTR_0004s09920 N 0.714
TCM_019459 Theobroma cacao TCM_019459 N 0.714
cassava6185.valid.m1 Manihot esculenta cassava6185.valid.m1 N 0.714
Cagra.6164s0006 Capsella grandiflora Cagra.6164s0006 N 0.714
Carubv10021721m.g Capsella rubella Carubv10021721m.g N 0.714
SapurV1A.0315s0090 Salix purpurea SapurV1A.0315s0090 N 0.714
Thhalv10019048m.g Eutrema salsugineum Thhalv10019048m.g N 0.714
PK03169.1 Cannabis sativa PK03169.1 N 0.714
LBD40 Arabidopsis lyrata Al_scaffold_0002_1337 N 0.704
AMTR_s00079p00088960 Amborella trichopoda AMTR_s00079p00088960 N 0.704
BGIOSGA010258 Oryza indica BGIOSGA010258 N 0.704
GLYMA08G48040 Glycine max GLYMA08G48040 N 0.704
GLYMA19G06280 Glycine max GLYMA19G06280 N 0.704
GRMZM2G017319 Zea mays GRMZM2G017319 N 0.704
GSMUA_Achr3G29520_001 Musa acuminata GSMUA_Achr3G29520_001 N 0.704
GSMUA_Achr4G13790_001 Musa acuminata GSMUA_Achr4G13790_001 N 0.704
MTR_1g106420 Medicago truncatula MTR_1g106420 N 0.704
MTR_7g007010 Medicago truncatula MTR_7g007010 N 0.704
OBART03G25820 Oryza barthii OBART03G25820 N 0.704
OGLUM03G26640 Oryza glumaepatula OGLUM03G26640 N 0.704
ONIVA03G26970 Oryza nivara ONIVA03G26970 N 0.704
OPUNC03G23160 Oryza punctata OPUNC03G23160 N 0.704
ORGLA03G0239300 Oryza glaberrima ORGLA03G0239300 N 0.704
ORUFI03G26700 Oryza rufipogon ORUFI03G26700 N 0.704
OS03G0609500 Oryza sativa OS03G0609500 N 0.704
POPTR_0005s15670 Populus trichocarpa POPTR_0005s15670 N 0.704
PRUPE_ppa010480mg Prunus persica PRUPE_ppa010480mg N 0.704
Sb03g007270 Sorghum bicolor Sb03g007270 N 0.704
Si037275m.g Setaria italica Si037275m.g N 0.704
TCM_009888 Theobroma cacao TCM_009888 N 0.704
Traes_4AL_7241716B6 Triticum aestivum Traes_4AL_7241716B6 N 0.704
TRIUR3_28321 Triticum urartu TRIUR3_28321 N 0.704
Cla007208 Citrullus lanatus Cla007208 N 0.704
cassava60.valid.m1 Manihot esculenta cassava60.valid.m1 N 0.704
Cucsa.031350 Cucumis sativus Cucsa.031350 N 0.704
Aquca_017_00034 Aquilegia coerulea Aquca_017_00034 N 0.704
Aquca_026_00293 Aquilegia coerulea Aquca_026_00293 N 0.704
Bostr.26959s0198 Boechera stricta Bostr.26959s0198 N 0.704
Ciclev10013705m.g Citrus clementina Ciclev10013705m.g N 0.704
orange1.1g022591m.g Citrus sinensis orange1.1g022591m.g N 0.704
Pavir.Ea00650 Panicum virgatum Pavir.Ea00650 N 0.704
Pavir.J11724 Panicum virgatum Pavir.J11724 N 0.704
Pavir.J16587 Panicum virgatum Pavir.J16587 N 0.704