ENSAMXG00000012752 (Astyanax mexicanus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSAMXG00000012752 T087263_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EGR2
M00233_2.00 		Homo sapiens
HDCCCMCDBN
NVHGKGGGHD		 PBM
Barrera et al.(2016)
EGR2_REF 		0.790 0.884
Egr2
M00778_2.00 		Mus musculus
YRCCCMCGYN
NRCGKGGGYR		 PBM
Weirauch et al.(2013)
pTH3091 		0.790 0.884
EGR2
M02885_2.00 		Homo sapiens
MCGCCCACGCD
HGCGTGGGCGK		 SELEX
Jolma et al.(2013)
EGR2_1 		0.790 0.884
EGR2
M02886_2.00 		Homo sapiens
NNMCGCCCACGCDNN
NNHGCGTGGGCGKNN		 SELEX
Jolma et al.(2013)
EGR2_2 		0.790 0.884
EGR2
M04439_2.00 		Homo sapiens
HMCRCCCACGCNN
NNGCGTGGGYGKD		 SELEX
Yin et al.(2017)
EGR2_FL_HT-SELEX 		0.790 0.884
EGR2
M08302_2.00 		Homo sapiens
CDCCCMCDC
GHGKGGGHG		 ChIP-seq
Schmitges et al.(2016)
P11161_1-3.RCADE 		0.790 0.884
EGR2
M08884_2.00 		Homo sapiens
YYCCDCCCMCDCHYHYHY
RDRDRDGHGKGGGHGGRR		 Misc
Kulakovskiy et al.(2013)
EGR2_HUMAN.H11MO.0.A 		0.790 0.884
Egr2
M08994_2.00 		Mus musculus
BHYCCDCCCMCDCN
NGHGKGGGHGGRDV		 Misc
Kulakovskiy et al.(2013)
EGR2_MOUSE.H11MO.0.A 		0.790 0.884
Egr2
M09515_2.00 		Mus musculus
NMCRCCCACDSN
NSHGTGGGYGKN		 Misc
Heinz et al.(2010)
Thymocytes-Egr2_GSE34254 		0.790 0.884
EGR2
M10197_2.00 		Homo sapiens
MCGCCYACGCAH
DTGCGTRGGCGK		 Transfac
Matys et al.(2006)
V$EGR2_01 		0.790 0.884
EGR2
M10198_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR2_Q4 		0.790 0.884
EGR2
M10199_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR2_Q6 		0.790 0.884
EGR2
M04440_2.00 		Homo sapiens
NMCGCCCACRCRN
NYGYGTGGGCGKN		 SELEX
Yin et al.(2017)
EGR2_FL_Methyl-HT-SELEX 		0.790 0.884
EGR2
M00232_2.00 		Homo sapiens
NHMCGCCYNN
NNRGGCGKDN		 PBM
Barrera et al.(2016)
EGR2_R409W 		0.789 0.870
Egr3
M00776_2.00 		Mus musculus
HHDCCCMCDN
NHGKGGGHDD		 PBM
Weirauch et al.(2013)
pTH2820 		0.771 0.870
EGR3
M02915_2.00 		Homo sapiens
NHMCGCCCMCGCAHN
NDTGCGKGGGCGKDN		 SELEX
Jolma et al.(2013)
EGR3_1 		0.771 0.870
Egr3
M02931_2.00 		Mus musculus
HMCGCCCACGCAHWN
NWDTGCGTGGGCGKD		 SELEX
Jolma et al.(2013)
Egr3_1 		0.771 0.870
EGR3
M04583_2.00 		Homo sapiens
HMCGCCCACGCRH
DYGCGTGGGCGKD		 SELEX
Yin et al.(2017)
EGR3_FL_HT-SELEX 		0.771 0.870
EGR3
M08349_2.00 		Homo sapiens
CDCCYCCDC
GHGGRGGHG		 ChIP-seq
Schmitges et al.(2016)
Q06889_1-3.RCADE 		0.771 0.870
EGR3
M10279_2.00 		Homo sapiens
MCGCCYACGCWN
NWGCGTRGGCGK		 Transfac
Matys et al.(2006)
V$EGR3_01 		0.771 0.870
EGR3
M10280_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR3_Q3 		0.771 0.870
EGR3
M10281_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR3_Q6 		0.771 0.870
EGR3
M04584_2.00 		Homo sapiens
NMCGCCCACGCRH
DYGCGTGGGCGKN		 SELEX
Yin et al.(2017)
EGR3_FL_Methyl-HT-SELEX 		0.771 0.870
Egr1
M01864_2.00 		Mus musculus
CCCMCGYNN
NNRCGKGGG		 PBM
Weirauch et al.(2014)
pTH5337 		0.770 0.855
Egr1
M00375_2.00 		Mus musculus
NCCYMCDNN
NNHGKRGGN		 PBM
Berger et al.(2006)
Zif268 		0.770 0.855
EGR1
M02883_2.00 		Homo sapiens
NMCGCCCMCGCANN
NNTGCGKGGGCGKN		 SELEX
Jolma et al.(2013)
EGR1_1 		0.770 0.855
EGR1
M02884_2.00 		Homo sapiens
HMCGCCCACGCAHW
WDTGCGTGGGCGKD		 SELEX
Jolma et al.(2013)
EGR1_2 		0.770 0.855
Egr1
M02932_2.00 		Mus musculus
HHMCGCCCMCBCAHHH
DDDTGVGKGGGCGKDD		 SELEX
Jolma et al.(2013)
Egr1_1 		0.770 0.855
EGR1
M04437_2.00 		Homo sapiens
NNCRCCCMCRCNN
NNGYGKGGGYGNN		 SELEX
Yin et al.(2017)
EGR1_eDBD_HT-SELEX 		0.770 0.855
Egr1
M05860_2.00 		Mus musculus
NNMCRCCCMCGCN
NGCGKGGGYGKNN		 SMiLE-seq
Isakova et al.(2017)
EGR1 		0.770 0.855
EGR1
M07927_2.00 		Homo sapiens
NVBNNNNBCCGCCCMCGCNB
VNGCGKGGGCGGVNNNNVBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_EGR1_HudsonAlpha 		0.770 0.855
EGR1
M07928_2.00 		Homo sapiens
BNCCGCCCMCGCNBB
VVNGCGKGGGCGGNV		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_EGR1_HudsonAlpha 		0.770 0.855
EGR1
M07929_2.00 		Homo sapiens
NNNNNNBNNCCRCCCMCGCN
NGCGKGGGYGGNNVNNNNNN		 ChIP-seq
Gerstein et al.(2012)
K562_EGR1_HudsonAlpha 		0.770 0.855
EGR1
M08882_2.00 		Homo sapiens
BHNCCDCCCMCDCHBNB
VNVDGHGKGGGHGGNDV		 Misc
Kulakovskiy et al.(2013)
EGR1_HUMAN.H11MO.0.A 		0.770 0.855
Egr1
M08996_2.00 		Mus musculus
YYCCRCCCMCGCNB
VNGCGKGGGYGGRR		 Misc
Kulakovskiy et al.(2013)
EGR1_MOUSE.H11MO.0.A 		0.770 0.855
EGR1
M09506_2.00 		Homo sapiens
CRCCCMCRCA
TGYGKGGGYG		 Misc
Heinz et al.(2010)
K562-Egr1_GSE32465 		0.770 0.855
EGR1
M10188_2.00 		Homo sapiens
MCGCCYACGCAW
WTGCGTRGGCGK		 Transfac
Matys et al.(2006)
V$EGR1_01 		0.770 0.855
EGR1
M10189_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR1_02 		0.770 0.855
EGR1
M10190_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR1_09 		0.770 0.855
EGR1
M10191_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR1_11 		0.770 0.855
EGR1
M10192_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR1_12 		0.770 0.855
EGR1
M10193_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR1_13 		0.770 0.855
EGR1
M10194_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR1_15 		0.770 0.855
EGR1
M10195_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR1_Q3 		0.770 0.855
EGR1
M10196_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EGR1_Q6 		0.770 0.855
EGR1
M04438_2.00 		Homo sapiens
NHCDCCCMCNYNN
NNRNGKGGGHGDN		 SELEX
Yin et al.(2017)
EGR1_eDBD_Methyl-HT-SELEX 		0.770 0.855
EGR4
M02889_2.00 		Homo sapiens
NHMCGCCCACGCAHHN
NDDTGCGTGGGCGKDN		 SELEX
Jolma et al.(2013)
EGR4_1 		0.764 0.725
EGR4
M02890_2.00 		Homo sapiens
NHMCGCCCACGCAHWH
DWDTGCGTGGGCGKDN		 SELEX
Jolma et al.(2013)
EGR4_2 		0.764 0.725
EGR4
M04461_2.00 		Homo sapiens
HMCGCCCACGCAH
DTGCGTGGGCGKD		 SELEX
Yin et al.(2017)
EGR4_eDBD_HT-SELEX 		0.764 0.725
EGR4
M10216_2.00 		Homo sapiens
MCRCCCACGCAW
WTGCGTGGGYGK		 Transfac
Matys et al.(2006)
V$NGFIC_01 		0.764 0.725
EGR4
M04462_2.00 		Homo sapiens
HMCGCCCMCGCRH
DYGCGKGGGCGKD		 SELEX
Yin et al.(2017)
EGR4_eDBD_Methyl-HT-SELEX 		0.764 0.725
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSAMXP00000013108 C2H2 ZF 287 311
ENSAMXP00000013108 C2H2 ZF 317 339
ENSAMXP00000013108 C2H2 ZF 345 367

Links

Other C2H2 ZF family TFs
Other Astyanax mexicanus TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01070 Aegilops tauschii F775_01070 I
F775_42450 Aegilops tauschii F775_42450 I
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I
fgenesh2_kg.6__2677__AT5G27880.1 Arabidopsis lyrata fgenesh2_kg.6__2677__AT5G27880.1 N
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I
ZFP5 Arabidopsis thaliana AT1G10480 D
GIS2 Arabidopsis thaliana AT5G06650 I
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I
Bostr.29827s0107 Boechera stricta Bostr.29827s0107 N
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I
Bo2g007320 Brassica oleracea Bo2g007320 I
Bo2g155500 Brassica oleracea Bo2g155500 N
Bo8g109510 Brassica oleracea Bo8g109510 I
Bo9g011450 Brassica oleracea Bo9g011450 I
Bo9g166240 Brassica oleracea Bo9g166240 I
Bra008787 Brassica rapa Bra008787 I
Bra020571 Brassica rapa Bra020571 N
Bra028724 Brassica rapa Bra028724 I
PK10012.1 Cannabis sativa PK10012.1 I
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I
Carubv10002570m.g Capsella rubella Carubv10002570m.g I
Carubv10003685m.g Capsella rubella Carubv10003685m.g I
Carubv10003820m.g Capsella rubella Carubv10003820m.g I
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I
Ca_08116 Cicer arietinum Ca_08116 I
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I
GLYMA03G37610 Glycine max GLYMA03G37610 I
GLYMA06G14783 Glycine max GLYMA06G14783 I
GLYMA19G40220 Glycine max GLYMA19G40220 I
MLOC_4507 Hordeum vulgare MLOC_4507 I
LPERR08G07840 Leersia perrieri LPERR08G07840 I
LPERR09G07930 Leersia perrieri LPERR09G07930 I
Lus10017229.g Linum usitatissimum Lus10017229.g I
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I
MDP0000121370 Malus domestica MDP0000121370 I
MDP0000165710 Malus domestica MDP0000165710 I
MDP0000166683 Malus domestica MDP0000166683 I
cassava44297.m1 Manihot esculenta cassava44297.m1 I
cassava45710.m1 Manihot esculenta cassava45710.m1 I
OBART09G11250 Oryza barthii OBART09G11250 I
OB09G17800 Oryza brachyantha OB09G17800 I
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I
BGIOSGA029710 Oryza indica BGIOSGA029710 I
OLONG_006424 Oryza longistaminata OLONG_006424 I
OMERI09G08780 Oryza meridionalis OMERI09G08780 I
ONIVA09G10990 Oryza nivara ONIVA09G10990 I
OPUNC09G09720 Oryza punctata OPUNC09G09720 I
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I
OS09G0431900 Oryza sativa OS09G0431900 I
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I
Pavir.J36164 Panicum virgatum Pavir.J36164 I
e_gw1.34.233.1 Physcomitrella patens e_gw1.34.233.1 I
Pm008291 Prunus mume Pm008291 I
30045.m000471 Ricinus communis 30045.m000471 I
30076.m004693 Ricinus communis 30076.m004693 I
SapurV1A.0052s0050 Salix purpurea SapurV1A.0052s0050 I
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I
SELMODRAFT_450817 Selaginella moellendorffii SELMODRAFT_450817 I
SELMODRAFT_450828 Selaginella moellendorffii SELMODRAFT_450828 I
SELMODRAFT_450830 Selaginella moellendorffii SELMODRAFT_450830 I
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I
Si028367m.g Setaria italica Si028367m.g I
Si031489m.g Setaria italica Si031489m.g I
Si037914m.g Setaria italica Si037914m.g I
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I
Sb01g034110 Sorghum bicolor Sb01g034110 I
Sb02g025390 Sorghum bicolor Sb02g025390 I
TCM_044725 Theobroma cacao TCM_044725 I
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I
TRIUR3_22340 Triticum urartu TRIUR3_22340 I
TRIUR3_34498 Triticum urartu TRIUR3_34498 I
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I
GRMZM2G037574 Zea mays GRMZM2G037574 I
GRMZM2G108818 Zea mays GRMZM2G108818 I
GRMZM2G115388 Zea mays GRMZM2G115388 I
GRMZM2G161255 Zea mays GRMZM2G161255 I
GRMZM2G403590 Zea mays GRMZM2G403590 I
GRMZM2G703281 Zea mays GRMZM2G703281 I