Scrt2 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000005148 T108899_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.827 0.991
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.827 0.991
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.827 0.991
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.786 0.900
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.786 0.900
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.786 0.900
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.786 0.900
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.774 0.845
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.774 0.845
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.774 0.845
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.774 0.845
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.758 0.809
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.758 0.809
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.758 0.809
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000006833 C2H2 ZF 155 177
ENSRNOP00000006833 C2H2 ZF 187 208
ENSRNOP00000006833 C2H2 ZF 212 234
ENSRNOP00000006833 C2H2 ZF 240 262
ENSRNOP00000006833 C2H2 ZF 268 286

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI004643 Acyrthosiphon pisum ACYPI004643 I 0.760
AAEL005176 Aedes aegypti AAEL005176 I 0.774
AAEL009230 Aedes aegypti AAEL009230 I 0.772
AAEL014359 Aedes aegypti AAEL014359 I 0.772
ENSAMEG00000005557 Ailuropoda melanoleuca ENSAMEG00000005557 I 0.786
ENSAPLG00000011730 Anas platyrhynchos ENSAPLG00000011730 I 0.784
SCRT2 Anolis carolinensis ENSACAG00000016109 I 0.784
AATE010651 Anopheles atroparvus AATE010651 I 0.772
AATE020159 Anopheles atroparvus AATE020159 I 0.774
ACHR010032 Anopheles christyi ACHR010032 I 0.774
ACOM031677 Anopheles coluzzii ACOM031677 I 0.772
ACOM031685 Anopheles coluzzii ACOM031685 I 0.774
ACUA003488 Anopheles culicifacies ACUA003488 I 0.772
ACUA020861 Anopheles culicifacies ACUA020861 I 0.772
ACUA022497 Anopheles culicifacies ACUA022497 I 0.774
AFAF007486 Anopheles farauti AFAF007486 I 0.774
AFAF017001 Anopheles farauti AFAF017001 I 0.772
AFUN001835 Anopheles funestus AFUN001835 I 0.772
AFUN002786 Anopheles funestus AFUN002786 I 0.774
AGAP006791 Anopheles gambiae AGAP006791 I 0.774
AGAP006794 Anopheles gambiae AGAP006794 I 0.772
AMEC013076 Anopheles melas AMEC013076 I 0.774
AMEC015586 Anopheles melas AMEC015586 I 0.772
AMEM013788 Anopheles merus AMEM013788 I 0.774
AMEM017035 Anopheles merus AMEM017035 I 0.772
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.774
ASIS012063 Anopheles sinensis ASIS012063 I 0.772
ASIS022059 Anopheles sinensis ASIS022059 I 0.774
ASTEI08595 Anopheles stephensi ASTEI08595 I 0.772
ALUE_0002049001 Ascaris lumbricoides ALUE_0002049001 I 0.760
ENSAMXG00000004776 Astyanax mexicanus ENSAMXG00000004776 I 0.784
ENSAMXG00000018604 Astyanax mexicanus ENSAMXG00000018604 I 0.793
ENSAMXG00000018733 Astyanax mexicanus ENSAMXG00000018733 I 0.784
BGIBMGA000607 Bombyx mori BGIBMGA000607 I 0.762
SCRT1 Bos taurus ENSBTAG00000046208 I 0.786
estExt_fgenesh2_pm.C_2290002 Branchiostoma floridae estExt_fgenesh2_pm.C_2290002 I 0.764
SCRT2 Callithrix jacchus ENSCJAG00000020870 I 0.827
SCRT1 Callithrix jacchus ENSCJAG00000021406 I 0.786
Cflo_09305--XP_001121064.1_APIME Camponotus floridanus Cflo_09305--XP_001121064.1_APIME I 0.772
CapteG149623 Capitella teleta CapteG149623 I 0.772
CapteG176021 Capitella teleta CapteG176021 I 0.772
CapteG223614 Capitella teleta CapteG223614 I 0.764
CapteG76620 Capitella teleta CapteG76620 I 0.772
SCRT2 Cavia porcellus ENSCPOG00000008447 I 0.827
ENSCPOG00000024058 Cavia porcellus ENSCPOG00000024058 I 0.786
Cmyd_10009565 Chelonia mydas Cmyd_10009565 I 0.784
ENSCSAG00000008549 Chlorocebus sabaeus ENSCSAG00000008549 I 0.786
ENSCSAG00000010473 Chlorocebus sabaeus ENSCSAG00000010473 I 0.827
CLEC001353 Cimex lectularius CLEC001353 I 0.774
CGI_10023711 Crassostrea gigas CGI_10023711 I 0.771
CpipJ_CPIJ004535 Culex pipiens CpipJ_CPIJ004535 I 0.772
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.774
CPIJ004535 Culex quinquefasciatus CPIJ004535 I 0.772
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.774
KGM_21493 Danaus plexippus KGM_21493 I 0.762
scrt1b Danio rerio ENSDARG00000040214 I 0.781
scrt2 Danio rerio ENSDARG00000056175 I 0.774
scrt1a Danio rerio ENSDARG00000100821 I 0.781
DAPPUDRAFT_129982 Daphnia pulex DAPPUDRAFT_129982 I 0.758
DAPPUDRAFT_14328 Daphnia pulex DAPPUDRAFT_14328 I 0.757
SCRT2 Dasypus novemcinctus ENSDNOG00000002583 I 0.827
SCRT1 Dasypus novemcinctus ENSDNOG00000043826 I 0.786
GF24781 Drosophila ananassae FBgn0101774 I 0.758
GF25020 Drosophila ananassae FBgn0102012 I 0.774
GG14232 Drosophila erecta FBgn0106493 I 0.758
GG15174 Drosophila erecta FBgn0107427 I 0.774
GH15771 Drosophila grimshawi FBgn0123242 I 0.774
scrt Drosophila melanogaster FBgn0004880 D 0.774
CG12605 Drosophila melanogaster FBgn0035481 D 0.758
GI12551 Drosophila mojavensis FBgn0135308 I 0.774
GI12763 Drosophila mojavensis FBgn0135520 I 0.756
GA11715 Drosophila pseudoobscura FBgn0071765 I 0.758
GM11368 Drosophila sechellia FBgn0166311 I 0.774
GM14024 Drosophila sechellia FBgn0168953 I 0.758
GM14603 Drosophila sechellia FBgn0169524 I 0.774
GD13304 Drosophila simulans FBgn0185023 I 0.758
GD13305 Drosophila simulans FBgn0185024 I 0.758
GD13794 Drosophila simulans FBgn0185494 I 0.774
GJ16103 Drosophila virilis FBgn0203288 I 0.774
GJ16104 Drosophila virilis FBgn0203289 I 0.756
GK16692 Drosophila willistoni FBgn0218694 I 0.758
GK17507 Drosophila willistoni FBgn0219506 I 0.774
GE20660 Drosophila yakuba FBgn0237965 I 0.758
GE21392 Drosophila yakuba FBgn0238652 I 0.774
EVEC_0000710001 Enterobius vermicularis EVEC_0000710001 I 0.760
SCRT2 Felis catus ENSFCAG00000010922 I 0.827
ENSFALG00000005718 Ficedula albicollis ENSFALG00000005718 I 0.786
ENSGMOG00000000629 Gadus morhua ENSGMOG00000000629 I 0.784
ENSGMOG00000019519 Gadus morhua ENSGMOG00000019519 I 0.784
SCRT2 Gallus gallus ENSGALG00000028912 I 0.784
SCRT1 Gasterosteus aculeatus ENSGACG00000004072 I 0.784
scrt1b Gasterosteus aculeatus ENSGACG00000008982 I 0.781
scrt2 Gasterosteus aculeatus ENSGACG00000011802 I 0.784
SCRT1 Gorilla gorilla ENSGGOG00000013612 I 0.786
ENSGGOG00000015228 Gorilla gorilla ENSGGOG00000015228 I 0.827
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.774
HHAL001095-PA Halyomorpha halys HHAL001095-PA I 0.774
HMEL014701 Heliconius melpomene HMEL014701 I 0.762
SCRT2 Homo sapiens ENSG00000215397 D 0.827
SCRT1 Homo sapiens ENSG00000261678 D 0.786
ENSSTOG00000023184 Ictidomys tridecemlineatus ENSSTOG00000023184 I 0.786
ISCW021315 Ixodes scapularis ISCW021315 I 0.784
ENSLACG00000003588 Latimeria chalumnae ENSLACG00000003588 I 0.781
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.770
ENSLOCG00000007573 Lepisosteus oculatus ENSLOCG00000007573 I 0.781
SCRT2 Loxodonta africana ENSLAFG00000030340 I 0.827
SCRT1 Loxodonta africana ENSLAFG00000031587 I 0.786
LCUP005780 Lucilia cuprina LCUP005780 I 0.774
LLOJ003272 Lutzomyia longipalpis LLOJ003272 I 0.774
ENSMMUG00000017354 Macaca mulatta ENSMMUG00000017354 I 0.827
SCRT1 Macaca mulatta ENSMMUG00000028886 I 0.785
ENSMEUG00000009675 Macropus eugenii ENSMEUG00000009675 I 0.796
MESCA005876 Megaselia scalaris MESCA005876 I 0.765
SCRT2 Meleagris gallopavo ENSMGAG00000016579 I 0.784
MCINX009925 Melitaea cinxia MCINX009925 I 0.762
SCRT2 Monodelphis domestica ENSMODG00000019528 I 0.796
MDOA005810 Musca domestica MDOA005810 I 0.774
Scrt1 Mus musculus ENSMUSG00000048385 I 0.786
Scrt2 Mus musculus ENSMUSG00000060257 I 0.827
ENSNLEG00000009420 Nomascus leucogenys ENSNLEG00000009420 I 0.827
Ocbimv22039583m.g Octopus bimaculoides Ocbimv22039583m.g I 0.764
Ogr05737 Ophisaurus gracilis Ogr05737 I 0.791
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.765
ENSONIG00000006007 Oreochromis niloticus ENSONIG00000006007 I 0.784
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I 0.784
ENSONIG00000019809 Oreochromis niloticus ENSONIG00000019809 I 0.784
scrt1b Oryzias latipes ENSORLG00000008641 I 0.784
scrt2 Oryzias latipes ENSORLG00000015072 I 0.784
SCRT1 Otolemur garnettii ENSOGAG00000026538 I 0.786
SCRT2 Otolemur garnettii ENSOGAG00000031187 I 0.827
ENSOARG00000014008 Ovis aries ENSOARG00000014008 I 0.786
ENSPANG00000017232 Papio anubis ENSPANG00000017232 I 0.786
PTRK_0000719800 Parastrongyloides trichosuri PTRK_0000719800 I 0.765
PHUM474050 Pediculus humanus PHUM474050 I 0.757
PHUM474180 Pediculus humanus PHUM474180 I 0.774
PPAI000594 Phlebotomus papatasi PPAI000594 I 0.774
ENSPFOG00000005616 Poecilia formosa ENSPFOG00000005616 I 0.784
ENSPFOG00000007738 Poecilia formosa ENSPFOG00000007738 I 0.784
ENSPFOG00000017719 Poecilia formosa ENSPFOG00000017719 I 0.784
Pvit_17685 Pogona vitticeps Pvit_17685 I 0.796
Scrt1 Rattus norvegicus ENSRNOG00000025594 I 0.786
nRc.2.0.1.g22231 Romanomermis culicivorax nRc.2.0.1.g22231 I 0.769
Sakowv30035375m.g Saccoglossus kowalevskii Sakowv30035375m.g I 0.772
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.783
SCUD_0000371801 Schistosoma curassoni SCUD_0000371801 I 0.757
A_07725 Schistosoma haematobium A_07725 I 0.757
Smp_054430 Schistosoma mansoni Smp_054430 I 0.757
SMRZ_0000904801 Schistosoma margrebowiei SMRZ_0000904801 I 0.757
SMTD_0000188801 Schistosoma mattheei SMTD_0000188801 I 0.757
SMU15013927 Schmidtea mediterranea SMU15013927 I 0.757
L596_g15116 Steinernema carpocapsae L596_g15116 I 0.763
L889_g21793 Steinernema feltiae L889_g21793 I 0.765
L893_g27175 Steinernema glaseri L893_g27175 I 0.763
L898_g5709 Steinernema monticolum L898_g5709 I 0.765
L892_g9690 Steinernema scapterisci L892_g9690 I 0.763
SMAR010760 Strigamia maritima SMAR010760 I 0.782
SPU_018393 Strongylocentrotus purpuratus SPU_018393 I 0.779
SPAL_0000842500 Strongyloides papillosus SPAL_0000842500 I 0.765
SSTP_0000144900 Strongyloides stercoralis SSTP_0000144900 I 0.765
SVE_1799900 Strongyloides venezuelensis SVE_1799900 I 0.765
SCRT1 Sus scrofa ENSSSCG00000025879 I 0.786
SMUV_0000843501 Syphacia muris SMUV_0000843501 I 0.760
SCRT2 Taeniopygia guttata ENSTGUG00000006801 I 0.784
scrt2 Takifugu rubripes ENSTRUG00000007620 I 0.784
scrt1b Takifugu rubripes ENSTRUG00000011637 I 0.784
SCRT1 Takifugu rubripes ENSTRUG00000012719 I 0.784
tetur08g05890 Tetranychus urticae tetur08g05890 I 0.793
scrt2 Tetraodon nigroviridis ENSTNIG00000012473 I 0.784
scrt1b Tetraodon nigroviridis ENSTNIG00000018384 I 0.784
TCNE_0000669301 Toxocara canis TCNE_0000669301 I 0.764
D917_06340 Trichinella nativa D917_06340 I 0.761
EFV52761 Trichinella spiralis EFV52761 I 0.761
TRE_0000944501 Trichobilharzia regenti TRE_0000944501 I 0.757
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.761
D918_03987 Trichuris suis D918_03987 I 0.761
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.761
SCRT2 Tursiops truncatus ENSTTRG00000007039 I 0.827
scrt2 Xenopus tropicalis XB-GENE-5995512 I 0.781
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I 0.784
ENSXMAG00000014491 Xiphophorus maculatus ENSXMAG00000014491 I 0.784
ENSXMAG00000015353 Xiphophorus maculatus ENSXMAG00000015353 I 0.784
L798_11766 Zootermopsis nevadensis L798_11766 I 0.774