POPTR_0008s13980 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0008s13980 T126818_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.811 0.976
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.811 0.976
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s13980.1 C2H2 ZF 135 156
POPTR_0008s13980.1 C2H2 ZF 156 181

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_43255 Aegilops tauschii F775_43255 I 0.816
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.788
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.827
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.788
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.811
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.811
IDD14 Arabidopsis thaliana AT1G68130 I 0.788
SGR5 Arabidopsis thaliana AT2G01940 D 0.811
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.811
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.811
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.788
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.816
Bo2g134790 Brassica oleracea Bo2g134790 I 0.811
Bo3g139880 Brassica oleracea Bo3g139880 I 0.811
Bo5g043540 Brassica oleracea Bo5g043540 I 0.806
Bo6g097320 Brassica oleracea Bo6g097320 I 0.788
Bo6g106560 Brassica oleracea Bo6g106560 I 0.788
Bo9g070370 Brassica oleracea Bo9g070370 I 0.811
Bra004050 Brassica rapa Bra004050 I 0.788
Bra004283 Brassica rapa Bra004283 I 0.788
Bra010981 Brassica rapa Bra010981 I 0.811
Bra017432 Brassica rapa Bra017432 I 0.811
Bra024771 Brassica rapa Bra024771 I 0.806
Bra024841 Brassica rapa Bra024841 I 0.818
Bra026624 Brassica rapa Bra026624 I 0.811
PK17145.1 Cannabis sativa PK17145.1 I 0.786
PK25720.1 Cannabis sativa PK25720.1 I 0.812
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.788
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.811
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.811
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.811
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.811
Carubv10020337m.g Capsella rubella Carubv10020337m.g I 0.788
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I 0.818
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.822
Ca_05083 Cicer arietinum Ca_05083 I 0.822
Ca_22171 Cicer arietinum Ca_22171 I 0.821
Cla005913 Citrullus lanatus Cla005913 I 0.783
Cla018945 Citrullus lanatus Cla018945 I 0.827
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.822
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.827
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.822
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.827
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.827
Cucsa.122150 Cucumis sativus Cucsa.122150 I 0.818
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.811
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.811
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.811
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.811
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.811
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.788
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.812
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.827
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.822
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.821
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.821
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.821
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.822
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.821
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.827
Gorai.005G134600 Gossypium raimondii Gorai.005G134600 I 0.812
Gorai.005G154300 Gossypium raimondii Gorai.005G154300 I 0.788
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I 0.812
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I 0.812
Gorai.008G169500 Gossypium raimondii Gorai.008G169500 I 0.803
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.827
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I 0.812
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.816
LPERR08G14510 Leersia perrieri LPERR08G14510 I 0.762
Lus10026369.g Linum usitatissimum Lus10026369.g I 0.812
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.822
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.822
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.812
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.827
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.818
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I 0.818
mgf008235m Mimulus guttatus mgf008235m I 0.821
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I 0.803
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.788
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.806
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.812
OBART08G17550 Oryza barthii OBART08G17550 I 0.762
OB09G18760 Oryza brachyantha OB09G18760 I 0.806
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.816
ORGLA08G0153600 Oryza glaberrima ORGLA08G0153600 I 0.762
ORGLA09G0169200 Oryza glaberrima ORGLA09G0169200 I 0.762
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.816
OGLUM08G18370 Oryza glumaepatula OGLUM08G18370 I 0.762
BGIOSGA011151 Oryza indica BGIOSGA011151 I 0.816
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.816
OMERI08G14120 Oryza meridionalis OMERI08G14120 I 0.762
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.816
ONIVA08G19430 Oryza nivara ONIVA08G19430 I 0.762
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.816
OPUNC08G15410 Oryza punctata OPUNC08G15410 I 0.762
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.816
OS03G0237250 Oryza sativa OS03G0237250 I 0.816
OS08G0467100 Oryza sativa OS08G0467100 I 0.762
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.816
estExt_Genewise1.C_2180024 Physcomitrella patens estExt_Genewise1.C_2180024 N 0.759
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.827
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.827
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I 0.818
Pm005926 Prunus mume Pm005926 I 0.812
Pm025274 Prunus mume Pm025274 I 0.822
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.822
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.812
28952.m000016 Ricinus communis 28952.m000016 I 0.827
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.803
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.827
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.818
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.827
Solyc01g005060.2 Solanum lycopersicum Solyc01g005060.2 I 0.788
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.827
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I 0.818
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I 0.827
TCM_011210 Theobroma cacao TCM_011210 I 0.827
TCM_039880 Theobroma cacao TCM_039880 I 0.818
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.816
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.827
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.827
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.816
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.816