Aan_R000616 (Calypte anna)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Aan_R000616 T132471_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.827 1.000
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.827 1.000
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.806 0.947
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.806 0.947
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.806 0.947
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Aan_R000616 C2H2 ZF 429 450
Aan_R000616 C2H2 ZF 456 478
Aan_R000616 C2H2 ZF 786 808
Aan_R000616 C2H2 ZF 814 836
Aan_R000616 C2H2 ZF 844 867

Links

Other C2H2 ZF family TFs
Other Calypte anna TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_10106 Aegilops tauschii F775_10106 I
F775_12121 Aegilops tauschii F775_12121 N
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I
Bo5g139340 Brassica oleracea Bo5g139340 I
Bo1g144510 Brassica oleracea Bo1g144510 I
Bra034067 Brassica rapa Bra034067 I
Bra029762 Brassica rapa Bra029762 I
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I
Carubv10000643m.g Capsella rubella Carubv10000643m.g I
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I
Ca_21127 Cicer arietinum Ca_21127 I
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I
Cucsa.175460 Cucumis sativus Cucsa.175460 I
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I
GLYMA07G15820 Glycine max GLYMA07G15820 I
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I
MLOC_50701 Hordeum vulgare MLOC_50701 N
LPERR01G31650 Leersia perrieri LPERR01G31650 I
Lus10024394.g Linum usitatissimum Lus10024394.g I
Lus10025351.g Linum usitatissimum Lus10025351.g I
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I
MDP0000219581 Malus domestica MDP0000219581 I
cassava9078.m1 Manihot esculenta cassava9078.m1 I
MTR_7g461410 Medicago truncatula MTR_7g461410 I
MTR_7g061330 Medicago truncatula MTR_7g061330 I
e_gw1.3.910.1 Micromonas pusilla e_gw1.3.910.1 N
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I
OPUNC01G35700 Oryza punctata OPUNC01G35700 N
MYB3R-2 Oryza sativa OS01G0841500 I
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I
Pm002704 Prunus mume Pm002704 I
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I
29846.m000184 Ricinus communis 29846.m000184 I
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I
SELMODRAFT_75978 Selaginella moellendorffii SELMODRAFT_75978 I
Si000842m.g Setaria italica Si000842m.g I
Sb03g039470 Sorghum bicolor Sb03g039470 I
TCM_021936 Theobroma cacao TCM_021936 I
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I
GRMZM2G081919 Zea mays GRMZM2G081919 I