RSKR_0000492900 (Rhabditophanes kr3021)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 RSKR_0000492900 T155892_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.765 0.781
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.765 0.781
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.765 0.781
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.765 0.781
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.761 0.763
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.761 0.763
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.761 0.763
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000492900.1 C2H2 ZF 137 159
RSKR_0000492900.1 C2H2 ZF 168 190
RSKR_0000492900.1 C2H2 ZF 194 216
RSKR_0000492900.1 C2H2 ZF 222 244
RSKR_0000492900.1 C2H2 ZF 250 271

Links

Other C2H2 ZF family TFs
Other Rhabditophanes kr3021 TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g07581 Acanthocheilonema viteae nAv.1.0.1.g07581 N 0.764
AAEL005176 Aedes aegypti AAEL005176 I 0.763
AAEL009230 Aedes aegypti AAEL009230 I 0.761
AAEL014359 Aedes aegypti AAEL014359 I 0.761
ENSAPLG00000011730 Anas platyrhynchos ENSAPLG00000011730 I 0.770
SCRT2 Anolis carolinensis ENSACAG00000016109 I 0.770
AATE010651 Anopheles atroparvus AATE010651 I 0.761
AATE020159 Anopheles atroparvus AATE020159 I 0.763
ACHR010032 Anopheles christyi ACHR010032 I 0.763
ACOM031677 Anopheles coluzzii ACOM031677 I 0.761
ACOM031685 Anopheles coluzzii ACOM031685 I 0.763
ACUA003488 Anopheles culicifacies ACUA003488 I 0.761
ACUA020861 Anopheles culicifacies ACUA020861 I 0.761
ACUA022497 Anopheles culicifacies ACUA022497 I 0.763
AFAF007486 Anopheles farauti AFAF007486 I 0.763
AFAF017001 Anopheles farauti AFAF017001 I 0.761
AFUN001835 Anopheles funestus AFUN001835 I 0.761
AFUN002786 Anopheles funestus AFUN002786 I 0.763
AGAP006791 Anopheles gambiae AGAP006791 I 0.763
AGAP006794 Anopheles gambiae AGAP006794 I 0.761
AMEC013076 Anopheles melas AMEC013076 I 0.763
AMEC015586 Anopheles melas AMEC015586 I 0.761
AMEM013788 Anopheles merus AMEM013788 I 0.763
AMEM017035 Anopheles merus AMEM017035 I 0.761
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.763
ASIS012063 Anopheles sinensis ASIS012063 I 0.761
ASIS022059 Anopheles sinensis ASIS022059 I 0.763
ASTEI08595 Anopheles stephensi ASTEI08595 I 0.761
ALUE_0002049001 Ascaris lumbricoides ALUE_0002049001 I 0.799
ENSAMXG00000004776 Astyanax mexicanus ENSAMXG00000004776 I 0.772
estExt_fgenesh2_pm.C_2290002 Branchiostoma floridae estExt_fgenesh2_pm.C_2290002 I 0.773
Bm4071 Brugia malayi Bm4071 N 0.764
Cflo_09305--XP_001121064.1_APIME Camponotus floridanus Cflo_09305--XP_001121064.1_APIME I 0.765
CapteG149623 Capitella teleta CapteG149623 I 0.779
CapteG176021 Capitella teleta CapteG176021 I 0.788
CapteG223614 Capitella teleta CapteG223614 I 0.783
CapteG76620 Capitella teleta CapteG76620 I 0.788
Cmyd_10009565 Chelonia mydas Cmyd_10009565 I 0.772
CLEC001353 Cimex lectularius CLEC001353 I 0.765
csin111588 Clonorchis sinensis csin111588 I 0.779
CGI_10023711 Crassostrea gigas CGI_10023711 I 0.785
CpipJ_CPIJ004535 Culex pipiens CpipJ_CPIJ004535 I 0.761
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.763
CPIJ004535 Culex quinquefasciatus CPIJ004535 I 0.761
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.763
scrt1b Danio rerio ENSDARG00000040214 I 0.775
scrt1a Danio rerio ENSDARG00000100821 I 0.775
DAPPUDRAFT_14328 Daphnia pulex DAPPUDRAFT_14328 I 0.771
DME_0000421901 Dracunculus medinensis DME_0000421901 I 0.785
GF24781 Drosophila ananassae FBgn0101774 I 0.761
GF25020 Drosophila ananassae FBgn0102012 I 0.765
GG14232 Drosophila erecta FBgn0106493 I 0.761
GG15174 Drosophila erecta FBgn0107427 I 0.765
GH15771 Drosophila grimshawi FBgn0123242 I 0.765
scrt Drosophila melanogaster FBgn0004880 D 0.765
CG12605 Drosophila melanogaster FBgn0035481 D 0.761
GI12551 Drosophila mojavensis FBgn0135308 I 0.765
GI12763 Drosophila mojavensis FBgn0135520 I 0.761
GA11715 Drosophila pseudoobscura FBgn0071765 I 0.763
GM11368 Drosophila sechellia FBgn0166311 I 0.765
GM14024 Drosophila sechellia FBgn0168953 I 0.761
GM14603 Drosophila sechellia FBgn0169524 I 0.765
GD13304 Drosophila simulans FBgn0185023 I 0.761
GD13305 Drosophila simulans FBgn0185024 I 0.761
GD13794 Drosophila simulans FBgn0185494 I 0.765
GJ16103 Drosophila virilis FBgn0203288 I 0.765
GJ16104 Drosophila virilis FBgn0203289 I 0.761
GK16692 Drosophila willistoni FBgn0218694 I 0.763
GK17507 Drosophila willistoni FBgn0219506 I 0.765
GE20660 Drosophila yakuba FBgn0237965 I 0.761
GE21392 Drosophila yakuba FBgn0238652 I 0.765
ECPE_0000958201 Echinostoma caproni ECPE_0000958201 I 0.779
EEL_0000648301 Elaeophora elaphi EEL_0000648301 N 0.764
EVEC_0000710001 Enterobius vermicularis EVEC_0000710001 I 0.790
D915_06717 Fasciola hepatica D915_06717 I 0.779
ENSFALG00000005718 Ficedula albicollis ENSFALG00000005718 I 0.772
ENSGMOG00000000629 Gadus morhua ENSGMOG00000000629 I 0.772
SCRT2 Gallus gallus ENSGALG00000028912 I 0.770
SCRT1 Gasterosteus aculeatus ENSGACG00000004072 I 0.774
scrt1b Gasterosteus aculeatus ENSGACG00000008982 I 0.770
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.765
HHAL001095-PA Halyomorpha halys HHAL001095-PA I 0.774
ISCW021315 Ixodes scapularis ISCW021315 I 0.763
ENSLACG00000003588 Latimeria chalumnae ENSLACG00000003588 I 0.775
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.761
ENSLOCG00000007573 Lepisosteus oculatus ENSLOCG00000007573 I 0.775
LOAG_08891 Loa loa LOAG_08891 I 0.761
LotgiG58520 Lottia gigantea LotgiG58520 I 0.766
LCUP005780 Lucilia cuprina LCUP005780 I 0.765
LLOJ003272 Lutzomyia longipalpis LLOJ003272 I 0.763
ENSMEUG00000009675 Macropus eugenii ENSMEUG00000009675 I 0.768
SCRT2 Meleagris gallopavo ENSMGAG00000016579 I 0.770
SCRT2 Monodelphis domestica ENSMODG00000019528 I 0.768
MDOA005810 Musca domestica MDOA005810 I 0.765
NEMVEDRAFT_v1g108258 Nematostella vectensis NEMVEDRAFT_v1g108258 I 0.758
Ocbimv22039583m.g Octopus bimaculoides Ocbimv22039583m.g I 0.783
nOo.2.0.1.g10180 Onchocerca ochengi nOo.2.0.1.g10180 N 0.764
WBGene00237257 Onchocerca volvulus WBGene00237257 N 0.764
Ogr05737 Ophisaurus gracilis Ogr05737 I 0.763
T265_09545 Opisthorchis viverrini T265_09545 I 0.779
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.774
ENSONIG00000006007 Oreochromis niloticus ENSONIG00000006007 I 0.772
ENSONIG00000019809 Oreochromis niloticus ENSONIG00000019809 I 0.774
scrt1b Oryzias latipes ENSORLG00000008641 I 0.772
PTRK_0000719800 Parastrongyloides trichosuri PTRK_0000719800 I 0.793
PHUM474180 Pediculus humanus PHUM474180 I 0.763
PPAI000594 Phlebotomus papatasi PPAI000594 I 0.763
ENSPFOG00000005616 Poecilia formosa ENSPFOG00000005616 I 0.774
ENSPFOG00000017719 Poecilia formosa ENSPFOG00000017719 I 0.772
Pvit_17685 Pogona vitticeps Pvit_17685 I 0.768
PXEA_0002510801 Protopolystoma xenopodis PXEA_0002510801 I 0.781
nRc.2.0.1.g22231 Romanomermis culicivorax nRc.2.0.1.g22231 I 0.774
Sakowv30035375m.g Saccoglossus kowalevskii Sakowv30035375m.g I 0.765
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.760
SCUD_0000371801 Schistosoma curassoni SCUD_0000371801 I 0.779
A_07725 Schistosoma haematobium A_07725 I 0.779
Sjc_0100840 Schistosoma japonicum Sjc_0100840 I 0.779
Smp_054430 Schistosoma mansoni Smp_054430 I 0.779
SMRZ_0000904801 Schistosoma margrebowiei SMRZ_0000904801 I 0.779
SMTD_0000188801 Schistosoma mattheei SMTD_0000188801 I 0.779
SMU15013927 Schmidtea mediterranea SMU15013927 I 0.788
L596_g15116 Steinernema carpocapsae L596_g15116 I 0.783
L889_g21793 Steinernema feltiae L889_g21793 I 0.781
L893_g27175 Steinernema glaseri L893_g27175 I 0.778
L898_g5709 Steinernema monticolum L898_g5709 I 0.771
L892_g9690 Steinernema scapterisci L892_g9690 I 0.783
SMAR010760 Strigamia maritima SMAR010760 I 0.770
SPU_018393 Strongylocentrotus purpuratus SPU_018393 I 0.770
SPAL_0000842500 Strongyloides papillosus SPAL_0000842500 I 0.802
SSTP_0000144900 Strongyloides stercoralis SSTP_0000144900 I 0.793
SVE_1799900 Strongyloides venezuelensis SVE_1799900 I 0.802
SMUV_0000843501 Syphacia muris SMUV_0000843501 I 0.790
SCRT2 Taeniopygia guttata ENSTGUG00000006801 I 0.770
scrt1b Takifugu rubripes ENSTRUG00000011637 I 0.772
SCRT1 Takifugu rubripes ENSTRUG00000012719 I 0.774
tetur08g05890 Tetranychus urticae tetur08g05890 I 0.765
scrt1b Tetraodon nigroviridis ENSTNIG00000018384 I 0.772
TCNE_0000669301 Toxocara canis TCNE_0000669301 I 0.793
D917_06340 Trichinella nativa D917_06340 I 0.779
EFV52761 Trichinella spiralis EFV52761 I 0.779
TRE_0000944501 Trichobilharzia regenti TRE_0000944501 I 0.779
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.775
D918_03987 Trichuris suis D918_03987 I 0.775
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.775
WUBG_08818 Wuchereria bancrofti WUBG_08818 N 0.764
scrt2 Xenopus tropicalis XB-GENE-5995512 I 0.774
ENSXMAG00000014491 Xiphophorus maculatus ENSXMAG00000014491 I 0.772
ENSXMAG00000015353 Xiphophorus maculatus ENSXMAG00000015353 I 0.774
L798_11766 Zootermopsis nevadensis L798_11766 I 0.765