Ogr09706 (Ophisaurus gracilis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Ogr09706 T165329_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.919 0.919
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.919 0.919
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr09706 CSD 33 69

Links

Other CSD family TFs
Other Ophisaurus gracilis TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.946
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.919
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.973
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.919
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.973
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.973
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.946
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.838
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.865
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.946
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.919
yakA12818 Bos grunniens yakA12818 I 0.919
yakG040859 Bos grunniens yakG040859 I 0.919
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.946
LIN28B Bos taurus ENSBTAG00000043973 I 0.919
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.973
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.919
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.946
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.865
Aan_R002277 Calypte anna Aan_R002277 I 0.865
Aan_R005866 Calypte anna Aan_R005866 I 0.973
LIN28B Canis familiaris ENSCAFG00000003598 I 0.919
LIN28A Canis familiaris ENSCAFG00000012488 I 0.946
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.973
Cmyd_10021069 Chelonia mydas Cmyd_10021069 I 0.919
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.946
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.919
LIN28A Danio rerio ENSDARG00000004328 I 0.919
lin28a Danio rerio ENSDARG00000016999 I 0.703
lin28b Danio rerio ENSDARG00000052511 I 0.838
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.946
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.919
LIN28B Echinops telfairi ENSETEG00000015340 I 0.892
LIN28A Equus caballus ENSECAG00000020267 I 0.946
LIN28B Equus caballus ENSECAG00000020994 I 0.919
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.919
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.946
LIN28B Felis catus ENSFCAG00000005058 I 0.919
LIN28A Felis catus ENSFCAG00000012810 I 0.946
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.973
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.838
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.865
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.973
LIN28B Gallus gallus ENSGALG00000026761 I 0.892
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.919
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.973
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.919
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.946
LIN28A Homo sapiens ENSG00000131914 I 0.946
LIN28B Homo sapiens ENSG00000187772 D 0.919
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.892
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.946
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.919
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.892
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.946
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.919
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.919
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.946
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.919
ENSMMUG00000032211 Macaca mulatta ENSMMUG00000032211 I 0.946
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.946
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.973
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.892
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.919
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.919
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.919
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.946
Lin28a Mus musculus ENSMUSG00000050966 I 0.946
Lin28b Mus musculus ENSMUSG00000063804 I 0.892
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.946
LIN28B Myotis lucifugus ENSMLUG00000006883 I 0.919
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.946
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.946
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.919
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.946
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.919
Ogr14286 Ophisaurus gracilis Ogr14286 I 0.838
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.946
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.919
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.946
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.946
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.946
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.946
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.946
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.919
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.946
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.919
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.946
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.919
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.919
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.946
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.919
ENSPSIG00000018001 Pelodiscus sinensis ENSPSIG00000018001 I 0.973
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.946
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.838
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.919
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.973
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.946
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.919
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.919
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.946
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.892
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.946
ENSSHAG00000012716 Sarcophilus harrisii ENSSHAG00000012716 I 0.919
LIN28B Sorex araneus ENSSARG00000008374 I 0.919
LIN28A Sus scrofa ENSSSCG00000003557 I 0.946
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.919
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.973
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.838
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.919
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.946
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.811
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.946
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.919
Tal_R007754 Tyto alba Tal_R007754 I 0.973
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.946
lin28a.S Xenopus laevis XB-GENE-866059 I 0.892
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.838
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.946