Eucgr.C04090 (Eucalyptus grandis)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Eucgr.C04090 T181341_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.920 0.920
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.920 0.920
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.C04090.1 FAR1 61 148
Eucgr.C04090.2 FAR1 61 148

Links

Other FAR1 family TFs
Other Eucalyptus grandis TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g02699 Acanthocheilonema viteae nAv.1.0.1.g02699 I
ANCCAN_10701 Ancylostoma caninum ANCCAN_10701 I
ASU_11043 Ascaris suum ASU_11043 I
Bm9026 Brugia malayi Bm9026 I
BXY_0483000 Bursaphelenchus xylophilus BXY_0483000 I
CBN12312 Caenorhabditis brenneri CBN12312 I
CBG19812 Caenorhabditis briggsae CBG19812 I
klu-1 Caenorhabditis elegans WBGene00013970 D
CJA16091 Caenorhabditis japonica CJA16091 I
CRE13956 Caenorhabditis remanei CRE13956 I
CGOC_0000202301 Cylicostephanus goldi CGOC_0000202301 I
nDi.2.2.2.g07689 Dirofilaria immitis nDi.2.2.2.g07689 I
EEL_0000130601 Elaeophora elaphi EEL_0000130601 I
GPLIN_001505900 Globodera pallida GPLIN_001505900 I
HCOI02146900 Haemonchus contortus HCOI02146900 I
nLs.2.1.2.g02913 Litomosoides sigmodontis nLs.2.1.2.g02913 I
LOAG_17546 Loa loa LOAG_17546 I
MhA1_Contig1668.frz3.gene4 Meloidogyne hapla MhA1_Contig1668.frz3.gene4 I
MhA1_Contig3096.frz3.gene1 Meloidogyne hapla MhA1_Contig3096.frz3.gene1 I
WBGene00248644 Onchocerca volvulus WBGene00248644 I
L596_g19227 Steinernema carpocapsae L596_g19227 I
L898_g5287 Steinernema monticolum L898_g5287 I
L892_g30369 Steinernema scapterisci L892_g30369 I
SPAL_0000289400 Strongyloides papillosus SPAL_0000289400 I
SVE_1611300 Strongyloides venezuelensis SVE_1611300 I