GSMUA_Achr5G15220_001 (Musa acuminata)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 GSMUA_Achr5G15220_001 T193613_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.848 0.889
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.848 0.889
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.848 0.917
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.838 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.838 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.838 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.833 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.832 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.832 0.750
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.832 0.750
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.832 0.750
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.830 0.778
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.830 0.778
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.819 0.750
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.819 0.750
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.819 0.750
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.819 0.750
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr5P15220_001 GATA 206 241

Links

Other GATA family TFs
Other Musa acuminata TFs

609 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05073 Aegilops tauschii F775_05073 I
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Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N
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AT2G34450 Arabidopsis thaliana AT2G34450 N
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I
Bo4g182600 Brassica oleracea Bo4g182600 N
Bra021911 Brassica rapa Bra021911 N
PK22924.1 Cannabis sativa PK22924.1 N
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N
Ca_05164 Cicer arietinum Ca_05164 N
Ca_05162 Cicer arietinum Ca_05162 N
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N
Cucsa.047620 Cucumis sativus Cucsa.047620 N
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N
GLYMA08G08840 Glycine max GLYMA08G08840 N
GLYMA05G25900 Glycine max GLYMA05G25900 N
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N
MLOC_7069 Hordeum vulgare MLOC_7069 N
LPERR01G21970 Leersia perrieri LPERR01G21970 N
Lus10025391.g Linum usitatissimum Lus10025391.g N
Lus10015268.g Linum usitatissimum Lus10015268.g N
MDP0000695104 Malus domestica MDP0000695104 N
MDP0000392251 Malus domestica MDP0000392251 N
MDP0000170945 Malus domestica MDP0000170945 N
MDP0000143506 Malus domestica MDP0000143506 N
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N
MTR_4g094622 Medicago truncatula MTR_4g094622 N
mgf009922m Mimulus guttatus mgf009922m N
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N
OBART01G25720 Oryza barthii OBART01G25720 N
OB01G34910 Oryza brachyantha OB01G34910 I
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N
BGIOSGA004165 Oryza indica BGIOSGA004165 N
BGIOSGA004167 Oryza indica BGIOSGA004167 N
OMERI01G23390 Oryza meridionalis OMERI01G23390 N
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N
OS01G0666200 Oryza sativa OS01G0666200 N
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I
Pavir.J05892 Panicum virgatum Pavir.J05892 N
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N
29693.m002035 Ricinus communis 29693.m002035 N
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N
Si003021m.g Setaria italica Si003021m.g N
Sb03g030540 Sorghum bicolor Sb03g030540 N
TCM_029514 Theobroma cacao TCM_029514 N
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I
GRMZM2G024247 Zea mays GRMZM2G024247 N