Cla014810 (Citrullus lanatus)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cla014810 T195879_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.867 1.000
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.867 1.000
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.825 0.944
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.825 0.944
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla014810 GATA 133 168

Links

Other GATA family TFs
Other Citrullus lanatus TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.000
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.000
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.000
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.000
ASIL1 Arabidopsis thaliana AT1G54060 D 0.000
ASIL2 Arabidopsis thaliana AT3G14180 D 0.000
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.000
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.000
Bo6g033010 Brassica oleracea Bo6g033010 I 0.000
Bo6g050870 Brassica oleracea Bo6g050870 I 0.000
Bo3g184450 Brassica oleracea Bo3g184450 I 0.000
Bo3g065930 Brassica oleracea Bo3g065930 I 0.000
Bra014370 Brassica rapa Bra014370 I 0.000
Bra037960 Brassica rapa Bra037960 I 0.000
PK22475.1 Cannabis sativa PK22475.1 N 0.000
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.000
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.000
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.000
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.000
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.000
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.000
Cla015773 Citrullus lanatus Cla015773 I 0.000
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.000
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.000
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.000
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.000
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.000
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.000
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.000
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.000
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.000
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.000
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.000
MDP0000281471 Malus domestica MDP0000281471 I 0.000
MDP0000255104 Malus domestica MDP0000255104 I 0.000
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.000
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.000
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.000
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.000
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.000
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.000
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.000
Pm013209 Prunus mume Pm013209 I 0.000
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.000
29727.m000472 Ricinus communis 29727.m000472 I 0.000
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.000
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.000
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.000
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.000
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.000
TCM_029209 Theobroma cacao TCM_029209 I 0.000
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.000