PBX1 (Loxodonta africana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSLAFG00000015741 T211042_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 1.000
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 1.000
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 1.000
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 1.000
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 1.000
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 1.000
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 1.000
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 1.000
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 1.000
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 1.000
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 1.000
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 1.000
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 1.000
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 1.000
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 0.982
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 0.965
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 0.965
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 0.965
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.965
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.947
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.947
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.947
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.947
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.947
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.877
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.877
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000013204 Homeodomain 234 293
ENSLAFP00000020018 Homeodomain 146 205

Links

Other Homeodomain family TFs
Other Loxodonta africana TFs

436 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_17299 Aegilops tauschii F775_17299 I
AMTR_s00099p00039760 Amborella trichopoda AMTR_s00099p00039760 I
fgenesh2_kg.2__1406__AT1G71450.1 Arabidopsis lyrata fgenesh2_kg.2__1406__AT1G71450.1 I
scaffold_103754.1 Arabidopsis lyrata scaffold_103754.1 I
ERF022 Arabidopsis thaliana AT1G33760 I
ERF021 Arabidopsis thaliana AT1G71450 D
Bostr.3359s0006 Boechera stricta Bostr.3359s0006 I
BRADI4G21265 Brachypodium distachyon BRADI4G21265 I
Bo2g072910 Brassica oleracea Bo2g072910 I
Bo5g086680 Brassica oleracea Bo5g086680 I
Bo6g046850 Brassica oleracea Bo6g046850 I
Bo6g113020 Brassica oleracea Bo6g113020 I
Bo8g027240 Brassica oleracea Bo8g027240 I
Bra010210 Brassica rapa Bra010210 I
Bra016136 Brassica rapa Bra016136 I
Bra028009 Brassica rapa Bra028009 I
Cagra.2418s0001 Capsella grandiflora Cagra.2418s0001 I
Carubv10011715m.g Capsella rubella Carubv10011715m.g I
Carubv10012215m.g Capsella rubella Carubv10012215m.g I
Carubv10022349m.g Capsella rubella Carubv10022349m.g I
evm.TU.supercontig_21.69 Carica papaya evm.TU.supercontig_21.69 I
evm.TU.supercontig_21.70 Carica papaya evm.TU.supercontig_21.70 I
Cla012661 Citrullus lanatus Cla012661 I
Cla012665 Citrullus lanatus Cla012665 I
Ciclev10023857m.g Citrus clementina Ciclev10023857m.g I
Ciclev10024063m.g Citrus clementina Ciclev10024063m.g I
orange1.1g035756m.g Citrus sinensis orange1.1g035756m.g I
orange1.1g046901m.g Citrus sinensis orange1.1g046901m.g I
Cucsa.237150 Cucumis sativus Cucsa.237150 I
Cucsa.237170 Cucumis sativus Cucsa.237170 I
Eucgr.F02974 Eucalyptus grandis Eucgr.F02974 I
Eucgr.F02975 Eucalyptus grandis Eucgr.F02975 I
Eucgr.F02976 Eucalyptus grandis Eucgr.F02976 I
Thhalv10010002m.g Eutrema salsugineum Thhalv10010002m.g I
Thhalv10019659m.g Eutrema salsugineum Thhalv10019659m.g I
gene27017-v1.0-hybrid Fragaria vesca gene27017-v1.0-hybrid I
gene27021-v1.0-hybrid Fragaria vesca gene27021-v1.0-hybrid I
GLYMA01G44130 Glycine max GLYMA01G44130 I
GLYMA01G44140 Glycine max GLYMA01G44140 I
GLYMA11G01640 Glycine max GLYMA11G01640 I
Gorai.005G116500 Gossypium raimondii Gorai.005G116500 I
Gorai.009G266600 Gossypium raimondii Gorai.009G266600 I
Gorai.009G266700 Gossypium raimondii Gorai.009G266700 I
MLOC_55144 Hordeum vulgare MLOC_55144 I
LPERR11G07100 Leersia perrieri LPERR11G07100 I
Lus10002953.g Linum usitatissimum Lus10002953.g I
Lus10003513.g Linum usitatissimum Lus10003513.g N
Lus10006173.g Linum usitatissimum Lus10006173.g I
Lus10041052.g Linum usitatissimum Lus10041052.g N
chr2.CM0018.470.nd Lotus japonicus chr2.CM0018.470.nd I
chr2.CM0018.610.nd Lotus japonicus chr2.CM0018.610.nd I
MDP0000122739 Malus domestica MDP0000122739 I
MDP0000122740 Malus domestica MDP0000122740 I
MDP0000151428 Malus domestica MDP0000151428 I
MDP0000283350 Malus domestica MDP0000283350 I
cassava43172.valid.m1 Manihot esculenta cassava43172.valid.m1 I
cassava8552.m1 Manihot esculenta cassava8552.m1 I
MTR_5g008550 Medicago truncatula MTR_5g008550 I
MTR_5g008590 Medicago truncatula MTR_5g008590 I
GSMUA_Achr11G12650_001 Musa acuminata GSMUA_Achr11G12650_001 N
GSMUA_Achr2G20760_001 Musa acuminata GSMUA_Achr2G20760_001 I
OB11G16300 Oryza brachyantha OB11G16300 I
ORGLA11G0070000 Oryza glaberrima ORGLA11G0070000 I
OGLUM11G07800 Oryza glumaepatula OGLUM11G07800 I
BGIOSGA034227 Oryza indica BGIOSGA034227 I
OMERI11G06840 Oryza meridionalis OMERI11G06840 I
ONIVA11G08160 Oryza nivara ONIVA11G08160 I
OPUNC11G07750 Oryza punctata OPUNC11G07750 I
ORUFI11G08240 Oryza rufipogon ORUFI11G08240 I
OS11G0242300 Oryza sativa OS11G0242300 I
Pavir.J22217 Panicum virgatum Pavir.J22217 I
Pavir.J26137 Panicum virgatum Pavir.J26137 I
POPTR_0001s18180 Populus trichocarpa POPTR_0001s18180 I
POPTR_0003s05300 Populus trichocarpa POPTR_0003s05300 I
POPTR_0013s10330 Populus trichocarpa POPTR_0013s10330 I
POPTR_0013s10340 Populus trichocarpa POPTR_0013s10340 I
POPTR_0019s10420 Populus trichocarpa POPTR_0019s10420 I
POPTR_0019s10430 Populus trichocarpa POPTR_0019s10430 I
Pm004269 Prunus mume Pm004269 I
Pm004272 Prunus mume Pm004272 I
PRUPE_ppa012354mg Prunus persica PRUPE_ppa012354mg I
PRUPE_ppa018178mg Prunus persica PRUPE_ppa018178mg I
27805.m000021 Ricinus communis 27805.m000021 I
28118.m000034 Ricinus communis 28118.m000034 I
SapurV1A.0551s0030 Salix purpurea SapurV1A.0551s0030 I
SapurV1A.0551s0040 Salix purpurea SapurV1A.0551s0040 I
SapurV1A.1130s0090 Salix purpurea SapurV1A.1130s0090 I
SapurV1A.1130s0100 Salix purpurea SapurV1A.1130s0100 I
SapurV1A.1331s0040 Salix purpurea SapurV1A.1331s0040 I
SapurV1A.1331s0050 Salix purpurea SapurV1A.1331s0050 I
SapurV1A.3106s0010 Salix purpurea SapurV1A.3106s0010 I
Si026882m.g Setaria italica Si026882m.g I
Solyc11g042560.1 Solanum lycopersicum Solyc11g042560.1 I
Solyc11g042580.1 Solanum lycopersicum Solyc11g042580.1 I
PGSC0003DMG400017813 Solanum tuberosum PGSC0003DMG400017813 I
PGSC0003DMG400018054 Solanum tuberosum PGSC0003DMG400018054 I
Sb05g007135 Sorghum bicolor Sb05g007135 I
TCM_036269 Theobroma cacao TCM_036269 I
TCM_036270 Theobroma cacao TCM_036270 I
Traes_4AL_D2D7703821 Triticum aestivum Traes_4AL_D2D7703821 I
Traes_4BS_DD5E68382 Triticum aestivum Traes_4BS_DD5E68382 I
Traes_4DS_97AC77E13 Triticum aestivum Traes_4DS_97AC77E13 I
TRIUR3_32331 Triticum urartu TRIUR3_32331 I
VIT_18s0001g05850 Vitis vinifera VIT_18s0001g05850 I
AC198403.3_FG001 Zea mays AC198403.3_FG001 I