Cagra.0808s0012 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.0808s0012 T228193_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.781 0.711
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.663 0.444
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.663 0.444
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.663 0.444
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.663 0.444
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.578
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0808s0012.1.p Homeodomain 305 352

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

1020 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.000
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.000
ERF020 Arabidopsis thaliana AT1G71520 I 0.000
ERF019 Arabidopsis thaliana AT1G22810 D 0.000
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.000
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.000
Bo6g113060 Brassica oleracea Bo6g113060 I 0.000
Bo7g057680 Brassica oleracea Bo7g057680 I 0.000
Bo5g038890 Brassica oleracea Bo5g038890 I 0.000
Bo2g072950 Brassica oleracea Bo2g072950 I 0.000
Bra007974 Brassica rapa Bra007974 I 0.000
Bra012345 Brassica rapa Bra012345 I 0.000
Bra024539 Brassica rapa Bra024539 I 0.000
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.000
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.000
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.000
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.000
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.000
Ca_15055 Cicer arietinum Ca_15055 I 0.000
Cla012182 Citrullus lanatus Cla012182 I 0.000
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.000
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.000
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.000
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.000
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.000
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.000
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.000
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.000
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.000
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.000
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.000
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.000
mgf010891m Mimulus guttatus mgf010891m I 0.000
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.000
29938.m000611 Ricinus communis 29938.m000611 I 0.000
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.000
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.000
TCM_036224 Theobroma cacao TCM_036224 I 0.000