Gorai.001G134800 (Gossypium raimondii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gorai.001G134800 T228665_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.654 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G134800.1 Homeodomain 65 121
Gorai.001G134800.2 Homeodomain 65 121
Gorai.001G134800.3 Homeodomain 65 121
Gorai.001G134800.4 Homeodomain 65 121
Gorai.001G134800.5 Homeodomain 23 79

Links

Other Homeodomain family TFs
Other Gossypium raimondii TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.604
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.604
Bo9g006450 Brassica oleracea Bo9g006450 I 0.600
Bra034196 Brassica rapa Bra034196 I 0.600
PK25011.1 Cannabis sativa PK25011.1 D 0.654
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.604
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.604
Cla008712 Citrullus lanatus Cla008712 I 0.609
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.673
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.637
MDP0000207866 Malus domestica MDP0000207866 I 0.607
mgf007720m Mimulus guttatus mgf007720m I 0.618
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.636
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.646
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.604
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.614
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.647
TCM_040945 Theobroma cacao TCM_040945 I 0.698
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.614