L889_g20608 (Steinernema feltiae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 L889_g20608 T234627_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.760 0.873
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.760 0.873
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.760 0.873
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.760 0.873
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.760 0.836
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.760 0.836
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.760 0.836
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.760 0.836
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.760 0.836
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.759 0.855
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.759 0.855
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.759 0.855
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.759 0.855
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.759 0.855
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.759 0.855
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.759 0.836
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.753 0.836
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L889_g20608.t1 Homeodomain 17 72

Links

Other Homeodomain family TFs
Other Steinernema feltiae TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I
WRKY38 Arabidopsis lyrata scaffold_602308.1 I
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I
WRKY66 Arabidopsis thaliana AT1G80590 I
WRKY67 Arabidopsis thaliana AT1G66550 I
WRKY63 Arabidopsis thaliana AT1G66600 D
WRKY64 Arabidopsis thaliana AT1G66560 I
WRKY38 Arabidopsis thaliana AT5G22570 D
WRKY62 Arabidopsis thaliana AT5G01900 D
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I
Bo01002s040 Brassica oleracea Bo01002s040 I
Bo2g024040 Brassica oleracea Bo2g024040 I
Bo2g095820 Brassica oleracea Bo2g095820 I
Bo5g068250 Brassica oleracea Bo5g068250 I
Bra020196 Brassica rapa Bra020196 I
Bra028918 Brassica rapa Bra028918 I
Bra023211 Brassica rapa Bra023211 I
Bra020197 Brassica rapa Bra020197 I
Bra008459 Brassica rapa Bra008459 I
Bra008456 Brassica rapa Bra008456 I
Bra008454 Brassica rapa Bra008454 I
Bra002421 Brassica rapa Bra002421 I
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I
Cagra.20277s0001 Capsella grandiflora Cagra.20277s0001 I
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I
Carubv10022162m.g Capsella rubella Carubv10022162m.g I
Carubv10002472m.g Capsella rubella Carubv10002472m.g I
Carubv10012720m.g Capsella rubella Carubv10012720m.g I
Carubv10021420m.g Capsella rubella Carubv10021420m.g I
Carubv10021860m.g Capsella rubella Carubv10021860m.g I
Carubv10021899m.g Capsella rubella Carubv10021899m.g I
Carubv10022120m.g Capsella rubella Carubv10022120m.g I
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I
LPERR05G16170 Leersia perrieri LPERR05G16170 I
LPERR12G01070 Leersia perrieri LPERR12G01070 I
MDP0000828055 Malus domestica MDP0000828055 I
OBART05G20340 Oryza barthii OBART05G20340 I
OB05G17240 Oryza brachyantha OB05G17240 I
OB05G27830 Oryza brachyantha OB05G27830 I
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I
BGIOSGA017860 Oryza indica BGIOSGA017860 I
BGIOSGA030113 Oryza indica BGIOSGA030113 I
BGIOSGA030346 Oryza indica BGIOSGA030346 I
OLONG_002978 Oryza longistaminata OLONG_002978 I
OMERI05G18170 Oryza meridionalis OMERI05G18170 I
OMERI05G18250 Oryza meridionalis OMERI05G18250 I
OMERI05G18260 Oryza meridionalis OMERI05G18260 I
ONIVA05G21440 Oryza nivara ONIVA05G21440 I
ONIVA05G21460 Oryza nivara ONIVA05G21460 I
ONIVA09G03360 Oryza nivara ONIVA09G03360 I
OPUNC05G17980 Oryza punctata OPUNC05G17980 I
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I
OS05G0478400 Oryza sativa OS05G0478400 I
OS05G0478800 Oryza sativa OS05G0478800 I
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I
Traes_3DS_9A02CF31D Triticum aestivum Traes_3DS_9A02CF31D I