Carubv10015256m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10015256m.g T250626_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.967 0.959
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.967 0.959
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.967 0.959
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.944 0.811
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015256m MADF 163 244

Links

Other MADF family TFs
Other Capsella rubella TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_31501 Aegilops tauschii F775_31501 I 0.847
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.871
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.929
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.883
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.967
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.967
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.967
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.847
Bo5g137800 Brassica oleracea Bo5g137800 I 0.955
Bra029812 Brassica rapa Bra029812 I 0.955
PK04914.1 Cannabis sativa PK04914.1 D 0.944
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.971
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.914
Ca_20148 Cicer arietinum Ca_20148 I 0.948
Cla018015 Citrullus lanatus Cla018015 I 0.952
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.955
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.952
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.940
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.967
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.925
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.910
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.944
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.944
GLYMA20G33031 Glycine max GLYMA20G33031 I 0.839
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.942
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.875
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.867
MDP0000415733 Malus domestica MDP0000415733 I 0.903
MDP0000201016 Malus domestica MDP0000201016 I 0.903
MDP0000399495 Malus domestica MDP0000399495 I 0.903
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.950
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.948
mgf008067m Mimulus guttatus mgf008067m I 0.904
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.914
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.886
OB04G18670 Oryza brachyantha OB04G18670 I 0.884
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.850
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.872
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.872
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.872
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.872
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.839
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.850
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.924
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.885
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.881
Pm026265 Prunus mume Pm026265 I 0.939
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.939
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.912
28077.m000081 Ricinus communis 28077.m000081 I 0.895
29815.m000504 Ricinus communis 29815.m000504 I 0.950
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.880
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.925
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.880
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.863
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.863
Si009787m.g Setaria italica Si009787m.g I 0.847
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.943
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.943
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.862
TCM_043551 Theobroma cacao TCM_043551 I 0.880
TCM_022397 Theobroma cacao TCM_022397 I 0.931
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.847
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.847
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.847
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.941
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.922
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.851