AT5G38620 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G38620 T252920_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G38620
M10931_2.00		 Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G38620_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G38620.1 MADS box 13 64

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_20738 Aegilops tauschii F775_20738 I 0.000
F775_21292 Aegilops tauschii F775_21292 I 0.000
F775_22332 Aegilops tauschii F775_22332 I 0.000
Aquca_037_00291 Aquilegia coerulea Aquca_037_00291 I 0.000
Aquca_072_00063 Aquilegia coerulea Aquca_072_00063 I 0.000
BRADI5G19260 Brachypodium distachyon BRADI5G19260 I 0.000
Bo4g197410 Brassica oleracea Bo4g197410 I 0.000
Bo6g079210 Brassica oleracea Bo6g079210 N 0.000
Bra003482 Brassica rapa Bra003482 N 0.000
Bra040478 Brassica rapa Bra040478 I 0.000
PK11025.1 Cannabis sativa PK11025.1 I 0.000
PK21157.1 Cannabis sativa PK21157.1 I 0.000
Carubv10010429m.g Capsella rubella Carubv10010429m.g I 0.000
Carubv10017696m.g Capsella rubella Carubv10017696m.g I 0.000
evm.TU.contig_29173.1 Carica papaya evm.TU.contig_29173.1 I 0.000
evm.TU.supercontig_37.108 Carica papaya evm.TU.supercontig_37.108 I 0.000
evm.TU.supercontig_57.71 Carica papaya evm.TU.supercontig_57.71 I 0.000
Ca_01368 Cicer arietinum Ca_01368 I 0.000
Cla006845 Citrullus lanatus Cla006845 I 0.000
Cla017937 Citrullus lanatus Cla017937 I 0.000
Ciclev10020034m.g Citrus clementina Ciclev10020034m.g I 0.000
Ciclev10020450m.g Citrus clementina Ciclev10020450m.g I 0.000
orange1.1g013565m.g Citrus sinensis orange1.1g013565m.g I 0.000
orange1.1g015743m.g Citrus sinensis orange1.1g015743m.g I 0.000
Cucsa.241440 Cucumis sativus Cucsa.241440 I 0.000
Eucgr.E01093 Eucalyptus grandis Eucgr.E01093 I 0.000
Eucgr.G02345 Eucalyptus grandis Eucgr.G02345 I 0.000
Eucgr.L00348 Eucalyptus grandis Eucgr.L00348 I 0.000
Thhalv10006123m.g Eutrema salsugineum Thhalv10006123m.g I 0.000
gene01855-v1.0-hybrid Fragaria vesca gene01855-v1.0-hybrid I 0.000
gene18594-v1.0-hybrid Fragaria vesca gene18594-v1.0-hybrid I 0.000
GLYMA03G42301 Glycine max GLYMA03G42301 I 0.000
GLYMA07G05381 Glycine max GLYMA07G05381 I 0.000
GLYMA16G01951 Glycine max GLYMA16G01951 I 0.000
GLYMA19G45090 Glycine max GLYMA19G45090 I 0.000
Gorai.001G150200 Gossypium raimondii Gorai.001G150200 I 0.000
Gorai.003G073600 Gossypium raimondii Gorai.003G073600 I 0.000
Gorai.007G114200 Gossypium raimondii Gorai.007G114200 I 0.000
Gorai.008G132400 Gossypium raimondii Gorai.008G132400 I 0.000
MLOC_38822 Hordeum vulgare MLOC_38822 I 0.000
MLOC_44012 Hordeum vulgare MLOC_44012 I 0.000
LPERR02G22870 Leersia perrieri LPERR02G22870 I 0.000
LPERR03G01560 Leersia perrieri LPERR03G01560 N 0.000
LPERR04G18630 Leersia perrieri LPERR04G18630 N 0.000
Lus10034276.g Linum usitatissimum Lus10034276.g I 0.000
chr1.CM0105.800.nc Lotus japonicus chr1.CM0105.800.nc I 0.000
LjSGA_031920.1 Lotus japonicus LjSGA_031920.1 I 0.000
LjT15D16.50.nc Lotus japonicus LjT15D16.50.nc I 0.000
MDP0000138163 Malus domestica MDP0000138163 N 0.000
cassava29779.valid.m1 Manihot esculenta cassava29779.valid.m1 I 0.000
cassava36125.valid.m1 Manihot esculenta cassava36125.valid.m1 I 0.000
cassava39049.m1 Manihot esculenta cassava39049.m1 I 0.000
MTR_7g117455 Medicago truncatula MTR_7g117455 I 0.000
MTR_8g023990 Medicago truncatula MTR_8g023990 I 0.000
mgf023686m Mimulus guttatus mgf023686m I 0.000
GSMUA_Achr1G03600_001 Musa acuminata GSMUA_Achr1G03600_001 I 0.000
GSMUA_Achr4G26430_001 Musa acuminata GSMUA_Achr4G26430_001 I 0.000
OBART03G01650 Oryza barthii OBART03G01650 N 0.000
OBART04G22880 Oryza barthii OBART04G22880 I 0.000
OB02G35380 Oryza brachyantha OB02G35380 I 0.000
OB03G11610 Oryza brachyantha OB03G11610 N 0.000
OB05G32250 Oryza brachyantha OB05G32250 I 0.000
OB10G24100 Oryza brachyantha OB10G24100 N 0.000
ORGLA03G0014300 Oryza glaberrima ORGLA03G0014300 N 0.000
ORGLA04G0198400 Oryza glaberrima ORGLA04G0198400 I 0.000
OGLUM03G01630 Oryza glumaepatula OGLUM03G01630 N 0.000
OGLUM04G22780 Oryza glumaepatula OGLUM04G22780 I 0.000
BGIOSGA011738 Oryza indica BGIOSGA011738 N 0.000
BGIOSGA014498 Oryza indica BGIOSGA014498 I 0.000
OLONG_000415 Oryza longistaminata OLONG_000415 I 0.000
OMERI03G01600 Oryza meridionalis OMERI03G01600 N 0.000
ONIVA02G30750 Oryza nivara ONIVA02G30750 N 0.000
ONIVA04G22030 Oryza nivara ONIVA04G22030 I 0.000
OPUNC03G01540 Oryza punctata OPUNC03G01540 N 0.000
OS03G0120900 Oryza sativa OS03G0120900 N 0.000
OS04G0581400 Oryza sativa OS04G0581400 I 0.000
Pavir.Ga00960 Panicum virgatum Pavir.Ga00960 N 0.000
Pavir.Ia04549 Panicum virgatum Pavir.Ia04549 N 0.000
Pavir.Ib00059 Panicum virgatum Pavir.Ib00059 N 0.000
Pavir.J38226 Panicum virgatum Pavir.J38226 N 0.000
POPTR_0011s15270 Populus trichocarpa POPTR_0011s15270 I 0.000
POPTR_0014s10290 Populus trichocarpa POPTR_0014s10290 I 0.000
Pm024248 Prunus mume Pm024248 I 0.000
Pm028725 Prunus mume Pm028725 N 0.000
PRUPE_ppa015999mg Prunus persica PRUPE_ppa015999mg N 0.000
PRUPE_ppa019131mg Prunus persica PRUPE_ppa019131mg I 0.000
PRUPE_ppa019539mg Prunus persica PRUPE_ppa019539mg I 0.000
30068.m002615 Ricinus communis 30068.m002615 I 0.000
30076.m004471 Ricinus communis 30076.m004471 I 0.000
SapurV1A.0003s0340 Salix purpurea SapurV1A.0003s0340 I 0.000
SapurV1A.0162s0420 Salix purpurea SapurV1A.0162s0420 I 0.000
SapurV1A.0285s0040 Salix purpurea SapurV1A.0285s0040 I 0.000
Si011823m.g Setaria italica Si011823m.g N 0.000
Si036864m.g Setaria italica Si036864m.g N 0.000
Solyc08g083400.2 Solanum lycopersicum Solyc08g083400.2 I 0.000
PGSC0003DMG400012222 Solanum tuberosum PGSC0003DMG400012222 I 0.000
Sb01g049150 Sorghum bicolor Sb01g049150 N 0.000
Sb06g026370 Sorghum bicolor Sb06g026370 N 0.000
TCM_005014 Theobroma cacao TCM_005014 I 0.000
Traes_1BL_60A56C455 Triticum aestivum Traes_1BL_60A56C455 I 0.000
Traes_1BL_B8B4C1FB6 Triticum aestivum Traes_1BL_B8B4C1FB6 I 0.000
Traes_1BL_F14523046 Triticum aestivum Traes_1BL_F14523046 I 0.000
Traes_2AL_41E2E66D9 Triticum aestivum Traes_2AL_41E2E66D9 I 0.000
Traes_2BL_439C794F5 Triticum aestivum Traes_2BL_439C794F5 N 0.000
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.000
Traes_4DL_59B1C9052 Triticum aestivum Traes_4DL_59B1C9052 I 0.000
Traes_4DL_A83084AC1 Triticum aestivum Traes_4DL_A83084AC1 N 0.000
TRIUR3_24850 Triticum urartu TRIUR3_24850 I 0.000
TRIUR3_24950 Triticum urartu TRIUR3_24950 I 0.000
VIT_02s0025g03000 Vitis vinifera VIT_02s0025g03000 I 0.000
VIT_15s0048g02370 Vitis vinifera VIT_15s0048g02370 I 0.000
GRMZM2G018336 Zea mays GRMZM2G018336 I 0.000
GRMZM2G018485 Zea mays GRMZM2G018485 N 0.000
GRMZM2G065538 Zea mays GRMZM2G065538 I 0.000