Thhalv10019449m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10019449m.g T259151_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019449m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.708
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.708
Bo2g104810 Brassica oleracea Bo2g104810 I 0.702
Bo9g078450 Brassica oleracea Bo9g078450 I 0.723
Bra029469 Brassica rapa Bra029469 I 0.723
Bra018490 Brassica rapa Bra018490 I 0.723
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.729
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.729
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.702
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.702
Thhalv10019667m.g Eutrema salsugineum Thhalv10019667m.g N 0.702
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.872
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.787
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.957
Thhalv10019758m.g Eutrema salsugineum Thhalv10019758m.g N 0.872
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.915
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.915
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.766
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.766
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.766
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.766
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.957
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.936
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.957
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.745
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.745
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.783
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.864
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.886
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.915
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.915
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.957