Thhalv10028282m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10028282m.g T259200_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10028282m MADS box 17 62

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.783
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.717
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.761
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.783
AGL105 Arabidopsis thaliana AT5G37415 I 0.731
AGL77 Arabidopsis thaliana AT5G38740 I 0.783
AGL81 Arabidopsis thaliana AT5G39750 I 0.783
AGL98 Arabidopsis thaliana AT5G39810 I 0.745
AGL76 Arabidopsis thaliana AT5G40120 I 0.783
AGL43 Arabidopsis thaliana AT5G40220 I 0.761
AGL75 Arabidopsis thaliana AT5G41200 I 0.795
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.750
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.739
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.739
Bostr.3751s0031 Boechera stricta Bostr.3751s0031 I 0.739
Bostr.3751s0039 Boechera stricta Bostr.3751s0039 I 0.708
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.702
Bo4g139640 Brassica oleracea Bo4g139640 N 0.739
Bo4g139620 Brassica oleracea Bo4g139620 N 0.739
Bo4g139560 Brassica oleracea Bo4g139560 N 0.739
Bo00615s090 Brassica oleracea Bo00615s090 I 0.761
Bra025619 Brassica rapa Bra025619 N 0.739
Bra031864 Brassica rapa Bra031864 I 0.739
Bra025609 Brassica rapa Bra025609 I 0.723
Bra025607 Brassica rapa Bra025607 N 0.814
Carubv10006654m.g Capsella rubella Carubv10006654m.g I 0.717
Carubv10007591m.g Capsella rubella Carubv10007591m.g I 0.723
Thhalv10005313m.g Eutrema salsugineum Thhalv10005313m.g I 0.761
Thhalv10028184m.g Eutrema salsugineum Thhalv10028184m.g I 0.935