SCUD_0000460501 (Schistosoma curassoni)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 SCUD_0000460501 T259632_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.729 0.729
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.729 0.729
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.729 0.729
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.729 0.729
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.729 0.729
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.729 0.729
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.729 0.729
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.729 0.729
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.729 0.729
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.729 0.729
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.729 0.729
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.729 0.729
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.729 0.729
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.729 0.729
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.729 0.729
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.729 0.729
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.729 0.729
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.729 0.729
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.729 0.729
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.729 0.729
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.729 0.729
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.729 0.729
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SCUD_0000460501-mRNA-1 MADS box 124 171

Links

Other MADS box family TFs
Other Schistosoma curassoni TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_010_00556 Aquilegia coerulea Aquca_010_00556 N 0.000
Al_scaffold_0006_3588 Arabidopsis lyrata Al_scaffold_0006_3588 N 0.000
fgenesh2_kg.1__2924__AT1G27660.1 Arabidopsis lyrata fgenesh2_kg.1__2924__AT1G27660.1 N 0.000
BHLH110 Arabidopsis thaliana AT1G27660 N 0.000
BHLH154 Arabidopsis thaliana AT2G31730 N 0.000
AT4G05170 Arabidopsis thaliana AT4G05170 N 0.000
Bostr.26675s0184 Boechera stricta Bostr.26675s0184 N 0.000
Bostr.2983s0058 Boechera stricta Bostr.2983s0058 N 0.000
Bo3g026410 Brassica oleracea Bo3g026410 N 0.000
Bo4g049510 Brassica oleracea Bo4g049510 N 0.000
Bo9g076250 Brassica oleracea Bo9g076250 N 0.000
Bra005644 Brassica rapa Bra005644 N 0.000
Bra029562 Brassica rapa Bra029562 N 0.000
Cagra.1981s0012 Capsella grandiflora Cagra.1981s0012 N 0.000
Carubv10003683m.g Capsella rubella Carubv10003683m.g N 0.000
evm.TU.supercontig_99.32 Carica papaya evm.TU.supercontig_99.32 N 0.000
Ca_04928 Cicer arietinum Ca_04928 N 0.000
Cla011068 Citrullus lanatus Cla011068 N 0.000
Cla021101 Citrullus lanatus Cla021101 N 0.000
Ciclev10001291m.g Citrus clementina Ciclev10001291m.g N 0.000
orange1.1g035657m.g Citrus sinensis orange1.1g035657m.g N 0.000
Cucsa.359290 Cucumis sativus Cucsa.359290 N 0.000
Cucsa.342640 Cucumis sativus Cucsa.342640 N 0.000
Cucsa.095280 Cucumis sativus Cucsa.095280 N 0.000
Eucgr.D00881 Eucalyptus grandis Eucgr.D00881 N 0.000
Thhalv10029319m.g Eutrema salsugineum Thhalv10029319m.g N 0.000
Thhalv10017421m.g Eutrema salsugineum Thhalv10017421m.g N 0.000
gene11847-v1.0-hybrid Fragaria vesca gene11847-v1.0-hybrid N 0.000
Gorai.011G135700 Gossypium raimondii Gorai.011G135700 N 0.000
Gorai.009G199600 Gossypium raimondii Gorai.009G199600 N 0.000
MLOC_57076 Hordeum vulgare MLOC_57076 N 0.000
chr5.CM0200.1030.nc Lotus japonicus chr5.CM0200.1030.nc N 0.000
LjSGA_021413.2 Lotus japonicus LjSGA_021413.2 N 0.000
MDP0000168695 Malus domestica MDP0000168695 N 0.000
MDP0000262020 Malus domestica MDP0000262020 N 0.000
MDP0000687814 Malus domestica MDP0000687814 N 0.000
cassava21180.m1 Manihot esculenta cassava21180.m1 N 0.000
cassava36740.valid.m1 Manihot esculenta cassava36740.valid.m1 N 0.000
cassava37772.valid.m1 Manihot esculenta cassava37772.valid.m1 N 0.000
cassava37773.valid.m1 Manihot esculenta cassava37773.valid.m1 N 0.000
cassava42530.valid.m1 Manihot esculenta cassava42530.valid.m1 N 0.000
MTR_3g112170 Medicago truncatula MTR_3g112170 N 0.000
mgf013138m Mimulus guttatus mgf013138m N 0.000
GSMUA_Achr6G24280_001 Musa acuminata GSMUA_Achr6G24280_001 N 0.000
OLONG_021979 Oryza longistaminata OLONG_021979 N 0.000
OPUNC01G00360 Oryza punctata OPUNC01G00360 N 0.000
PDK_20s1709901g001 Phoenix dactylifera PDK_20s1709901g001 N 0.000
POPTR_0002s03380 Populus trichocarpa POPTR_0002s03380 N 0.000
POPTR_0005s25240 Populus trichocarpa POPTR_0005s25240 N 0.000
POPTR_0013s13050 Populus trichocarpa POPTR_0013s13050 N 0.000
POPTR_0019s12530 Populus trichocarpa POPTR_0019s12530 N 0.000
Pm007388 Prunus mume Pm007388 N 0.000
Pm005865 Prunus mume Pm005865 N 0.000
PRUPE_ppa012528mg Prunus persica PRUPE_ppa012528mg N 0.000
PRUPE_ppa005486mg Prunus persica PRUPE_ppa005486mg N 0.000
28405.m000015 Ricinus communis 28405.m000015 N 0.000
30170.m014085 Ricinus communis 30170.m014085 N 0.000
SapurV1A.0006s0290 Salix purpurea SapurV1A.0006s0290 N 0.000
SapurV1A.0188s0290 Salix purpurea SapurV1A.0188s0290 N 0.000
SapurV1A.0388s0180 Salix purpurea SapurV1A.0388s0180 N 0.000
Solyc04g080710.2 Solanum lycopersicum Solyc04g080710.2 N 0.000
Solyc02g084880.2 Solanum lycopersicum Solyc02g084880.2 N 0.000
PGSC0003DMG400003746 Solanum tuberosum PGSC0003DMG400003746 N 0.000
Sb03g008830 Sorghum bicolor Sb03g008830 N 0.000
TCM_019871 Theobroma cacao TCM_019871 N 0.000
TCM_034098 Theobroma cacao TCM_034098 N 0.000
VIT_05s0094g00480 Vitis vinifera VIT_05s0094g00480 N 0.000
VIT_18s0001g12970 Vitis vinifera VIT_18s0001g12970 N 0.000