CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OLONG_007470 *(Oryza longistaminata)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	OLONG_007470	T275897_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK08316.1 M02350_2.00	Cannabis sativa	NNNRWATCNN	NNGATWYNNN	PBM Weirauch et al.(2014) pTH9488	0.849	0.891
RVE7 M01069_2.00	Arabidopsis thaliana	NDHRWATCNN	NNGATWYDHN	PBM Sullivan et al.(2014) pTH7081	0.823	0.913
RVE7 M02286_2.00	Arabidopsis thaliana	NDARTATCH	DGATAYTHN	PBM Weirauch et al.(2014) pTH7277	0.823	0.913
RVE7L M07071_2.00	Arabidopsis thaliana	NNNNWAAATATCWNN	NNWGATATTTWNNNN	Dap-seq OMalley et al.(2016) AT3G10113_col_a	0.823	0.913
RVE7 M07008_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) EPR1_colamp_a	0.823	0.913
RVE7 M07009_2.00	Arabidopsis thaliana	NWAAATATCTHN	NDAGATATTTWN	Dap-seq OMalley et al.(2016) EPR1_col	0.823	0.913
RVE1 M00879_2.00	Arabidopsis thaliana	AAATATCT	AGATATTT	PBM Franco-Zorrilla et al.(2014) RVE1	0.773	0.804
RVE1 M07128_2.00	Arabidopsis thaliana	NNNWAAATATCTNN	NNAGATATTTWNNN	Dap-seq OMalley et al.(2016) RVE1_col_a	0.773	0.804
RVE1 M07129_2.00	Arabidopsis thaliana	NNWAATATCW	WGATATTWNN	Dap-seq OMalley et al.(2016) RVE1_colamp_a	0.773	0.804
LHY M06997_2.00	Arabidopsis thaliana	NWAAATATCT	AGATATTTWN	Dap-seq OMalley et al.(2016) LHY1_col_a	0.772	0.804
LHY M06998_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LHY1_colamp_a	0.772	0.804
OS08G0157600 M02330_2.00	Oryza sativa	DNRTATCHN	NDGATAYNH	PBM Weirauch et al.(2014) pTH7793	0.763	0.804
CCA1 M00875_2.00	Arabidopsis thaliana	NDNRWATCN	NGATWYNHN	PBM Franco-Zorrilla et al.(2014) CCA1	0.717	0.761
CCA1 M11039_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CCA1_Q5	0.717	0.761
RVE6 M01081_2.00	Arabidopsis thaliana	AATATCTD	HAGATATT	PBM Sullivan et al.(2014) pTH7151	0.707	0.674
RVE6 M07138_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At5g52660_col_a	0.707	0.674
RVE6 M07139_2.00	Arabidopsis thaliana	NNNWAAATATCT	AGATATTTWNNN	Dap-seq OMalley et al.(2016) At5g52660_colamp_a	0.707	0.674
RVE5 M01079_2.00	Arabidopsis thaliana	NWAATATCHN	NDGATATTWN	PBM Sullivan et al.(2014) pTH7138	0.704	0.652
RVE5 M07100_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At4g01280_col_a	0.704	0.652
RVE5 M07101_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At4g01280_colamp_a	0.704	0.652
RVE8 M01074_2.00	Arabidopsis thaliana	NNNRWATCNN	NNGATWYNNN	PBM Sullivan et al.(2014) pTH7136	0.697	0.674
RVE8 M07069_2.00	Arabidopsis thaliana	NHNWAAATATCT	AGATATTTWNDN	Dap-seq OMalley et al.(2016) At3g09600_col_a	0.697	0.674
RVE8 M07070_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At3g09600_colamp_a	0.697	0.674
PK02532.1 M02347_2.00	Cannabis sativa	WAATATCTN	NAGATATTW	PBM Weirauch et al.(2014) pTH9579	0.697	0.652
RVE4 M07117_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LCL1_colamp_a	0.697	0.652
RVE4 M07118_2.00	Arabidopsis thaliana	NAAAATATCT	AGATATTTTN	Dap-seq OMalley et al.(2016) LCL1_col	0.697	0.652
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OLONG_007470-R1	Myb	62	107	REKWTEEEHDKFLEALKLYGRSWRQIQEHIGTKTAVQIRSHAQKFF

Links
Other Myb/SANT family TFs
Other *Oryza longistaminata* TFs

478 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
F775_17625	Aegilops tauschii	F775_17625	N
BRADI2G52227	Brachypodium distachyon	BRADI2G52227	N
BRADI4G09197	Brachypodium distachyon	BRADI4G09197	N
MLOC_74705	Hordeum vulgare	MLOC_74705	N
LPERR11G20420	Leersia perrieri	LPERR11G20420	N
OBART12G16530	Oryza barthii	OBART12G16530	N
OBART11G23660	Oryza barthii	OBART11G23660	N
OBART11G23670	Oryza barthii	OBART11G23670	N
OB11G28090	Oryza brachyantha	OB11G28090	N
ORGLA12G0207400	Oryza glaberrima	ORGLA12G0207400	N
ORGLA12G0145700	Oryza glaberrima	ORGLA12G0145700	N
ORGLA11G0190300	Oryza glaberrima	ORGLA11G0190300	N
ORGLA11G0190200	Oryza glaberrima	ORGLA11G0190200	N
OGLUM12G18120	Oryza glumaepatula	OGLUM12G18120	N
BGIOSGA035742	Oryza indica	BGIOSGA035742	N
BGIOSGA037646	Oryza indica	BGIOSGA037646	N
BGIOSGA035741	Oryza indica	BGIOSGA035741	N
OMERI12G11530	Oryza meridionalis	OMERI12G11530	N
ONIVA12G14900	Oryza nivara	ONIVA12G14900	N
OPUNC12G15050	Oryza punctata	OPUNC12G15050	N
ORUFI11G25540	Oryza rufipogon	ORUFI11G25540	N
ORUFI11G25550	Oryza rufipogon	ORUFI11G25550	N
ORUFI12G18360	Oryza rufipogon	ORUFI12G18360	N
OS12G0573200	Oryza sativa	OS12G0573200	N
OS11G0705200	Oryza sativa	OS11G0705200	N
Pavir.Hb00044	Panicum virgatum	Pavir.Hb00044	N
Pavir.Ha00317	Panicum virgatum	Pavir.Ha00317	N
Si025985m.g	Setaria italica	Si025985m.g	N
Sb05g027740	Sorghum bicolor	Sb05g027740	N
Sb08g018940	Sorghum bicolor	Sb08g018940	N
TRAES3BF026400020CFD_g	Triticum aestivum	TRAES3BF026400020CFD_g	N
Traes_4AL_977AF4963	Triticum aestivum	Traes_4AL_977AF4963	N
Traes_4AL_FF199F127	Triticum aestivum	Traes_4AL_FF199F127	N
Traes_4BS_A79538646	Triticum aestivum	Traes_4BS_A79538646	N
Traes_4DS_050789E2A	Triticum aestivum	Traes_4DS_050789E2A	N
Traes_4DS_F8FC0C699	Triticum aestivum	Traes_4DS_F8FC0C699	N
Traes_5DL_E275797CE	Triticum aestivum	Traes_5DL_E275797CE	N
TRIUR3_21532	Triticum urartu	TRIUR3_21532	N
GRMZM2G159475	Zea mays	GRMZM2G159475	N
GRMZM2G163427	Zea mays	GRMZM2G163427	N
GRMZM2G179325	Zea mays	GRMZM2G179325	N
GRMZM5G868355	Zea mays	GRMZM5G868355	N

OLONG_007470 (Oryza longistaminata) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

478 Related TFs

OLONG_007470 **(Oryza longistaminata)
Myb/SANT**