Solyc03g112890.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc03g112890.1 T280080_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.674 0.806
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.674 0.806
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.664 0.774
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.664 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g112890.1.1 Myb 158 204
Solyc03g112890.1.1 Myb 210 255

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.664
MYB118 Arabidopsis thaliana AT3G27785 D 0.664
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.694
Bra025299 Brassica rapa Bra025299 I 0.675
Bra033027 Brassica rapa Bra033027 I 0.000
Cagra.8966s0002 Capsella grandiflora Cagra.8966s0002 N 0.000
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.694
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.694
Carubv10007482m.g Capsella rubella Carubv10007482m.g N 0.000
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.000
Cla010586 Citrullus lanatus Cla010586 I 0.000
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.000
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.000
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.711
Eucgr.B00300 Eucalyptus grandis Eucgr.B00300 I 0.000
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.703
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.720
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.689
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.714
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.000
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.725
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.672
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.719
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.000
Pm024743 Prunus mume Pm024743 I 0.728
Pm015681 Prunus mume Pm015681 I 0.675
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.728
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.675
29917.m001977 Ricinus communis 29917.m001977 I 0.000
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.000
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.748
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.748
TCM_016909 Theobroma cacao TCM_016909 I 0.672
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.000
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.728