Carubv10015750m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10015750m.g T286350_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB15
M07084_2.00 		Arabidopsis thaliana
NNNHNNHHNHHYCACCWAMYH
DRKTWGGTGRDDNDDNNDNNN		 Dap-seq
OMalley et al.(2016)
ATY19_col_a 		0.859 0.946
MYB15
M02699_2.00 		Arabidopsis thaliana
CCACCTACCSBBG
CVVSGGTAGGTGG		 SELEX
Mathelier et al.(2014)
MA0574.1 		0.859 0.946
MYB15
M11041_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_01 		0.859 0.946
MYB15
M11042_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_Q2 		0.859 0.946
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.756 0.796
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.756 0.796
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.721 0.828
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.721 0.828
AtMYB10
M07081_2.00 		Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB10_col_a 		0.713 0.742
AtMYB10
M07082_2.00 		Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB10_colamp_a 		0.713 0.742
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.666 0.731
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.665 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015750m Myb 14 61
Carubv10015750m Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

416 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I
MYB1 Arabidopsis thaliana AT3G09230 D
BRADI1G30252 Brachypodium distachyon BRADI1G30252 I
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I
PK07741.1 Cannabis sativa PK07741.1 D
PK16550.1 Cannabis sativa PK16550.1 I
PK17282.1 Cannabis sativa PK17282.1 I
PK29071.1 Cannabis sativa PK29071.1 I
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I
Carubv10013882m.g Capsella rubella Carubv10013882m.g I
Carubv10023692m.g Capsella rubella Carubv10023692m.g I
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I
Cla018417 Citrullus lanatus Cla018417 I
Cla021015 Citrullus lanatus Cla021015 I
Cla022889 Citrullus lanatus Cla022889 I
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I
Cucsa.066910 Cucumis sativus Cucsa.066910 I
Cucsa.123440 Cucumis sativus Cucsa.123440 I
Cucsa.232630 Cucumis sativus Cucsa.232630 I
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I
Eucgr.F00031 Eucalyptus grandis Eucgr.F00031 I
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I
gene09039-v1.0-hybrid Fragaria vesca gene09039-v1.0-hybrid I
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I
GLYMA01G26650 Glycine max GLYMA01G26650 I
GLYMA03G15810 Glycine max GLYMA03G15810 I
GLYMA04G04490 Glycine max GLYMA04G04490 I
GLYMA05G21220 Glycine max GLYMA05G21220 I
GLYMA14G06870 Glycine max GLYMA14G06870 I
GLYMA14G09540 Glycine max GLYMA14G09540 I
GLYMA17G35620 Glycine max GLYMA17G35620 I
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I
MLOC_10322 Hordeum vulgare MLOC_10322 I
MLOC_63964 Hordeum vulgare MLOC_63964 I
MLOC_64817 Hordeum vulgare MLOC_64817 I
MLOC_64963 Hordeum vulgare MLOC_64963 I
MLOC_7426 Hordeum vulgare MLOC_7426 I
LPERR02G05810 Leersia perrieri LPERR02G05810 I
LPERR05G10150 Leersia perrieri LPERR05G10150 I
LPERR06G18380 Leersia perrieri LPERR06G18380 I
LPERR09G00910 Leersia perrieri LPERR09G00910 I
Lus10028250.g Linum usitatissimum Lus10028250.g I
Lus10032764.g Linum usitatissimum Lus10032764.g I
Lus10040239.g Linum usitatissimum Lus10040239.g I
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I
chr5.CM0096.100.nc Lotus japonicus chr5.CM0096.100.nc I
CM0528.210.nd Lotus japonicus CM0528.210.nd I
MDP0000203733 Malus domestica MDP0000203733 I
MDP0000284922 Malus domestica MDP0000284922 I
MDP0000319124 Malus domestica MDP0000319124 I
MDP0000478512 Malus domestica MDP0000478512 I
MDP0000807341 Malus domestica MDP0000807341 I
MDP0000894463 Malus domestica MDP0000894463 I
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I
cassava47374.m1 Manihot esculenta cassava47374.m1 I
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I
cassava8939.m1 Manihot esculenta cassava8939.m1 I
MTR_4g019370 Medicago truncatula MTR_4g019370 I
MTR_6g015455 Medicago truncatula MTR_6g015455 I
mgf003084m Mimulus guttatus mgf003084m I
mgf006151m Mimulus guttatus mgf006151m I
mgf015566m Mimulus guttatus mgf015566m I
mgf018580m Mimulus guttatus mgf018580m I
mgf020432m Mimulus guttatus mgf020432m I
mgf023922m Mimulus guttatus mgf023922m I
mgf025567m Mimulus guttatus mgf025567m I
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I
GSMUA_Achr8G25220_001 Musa acuminata GSMUA_Achr8G25220_001 I
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I
OBART09G00310 Oryza barthii OBART09G00310 I
OB09G10200 Oryza brachyantha OB09G10200 I
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I
ORGLA06G0184100 Oryza glaberrima ORGLA06G0184100 I
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I
OGLUM06G23260 Oryza glumaepatula OGLUM06G23260 I
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I
BGIOSGA020819 Oryza indica BGIOSGA020819 I
BGIOSGA030245 Oryza indica BGIOSGA030245 I
OMERI02G07700 Oryza meridionalis OMERI02G07700 I
OMERI06G22090 Oryza meridionalis OMERI06G22090 I
OMERI08G05160 Oryza meridionalis OMERI08G05160 I
ONIVA02G08210 Oryza nivara ONIVA02G08210 I
ONIVA06G26080 Oryza nivara ONIVA06G26080 I
ONIVA09G00250 Oryza nivara ONIVA09G00250 I
OPUNC02G05820 Oryza punctata OPUNC02G05820 I
OPUNC06G19910 Oryza punctata OPUNC06G19910 I
OPUNC12G06260 Oryza punctata OPUNC12G06260 I
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I
ORUFI06G23790 Oryza rufipogon ORUFI06G23790 I
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I
OS02G0187700 Oryza sativa OS02G0187700 D
OS06G0637500 Oryza sativa OS06G0637500 I
OS09G0106700 Oryza sativa OS09G0106700 I
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I
Pavir.Da00404 Panicum virgatum Pavir.Da00404 I
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I
Pavir.J13677 Panicum virgatum Pavir.J13677 I
Pavir.J23512 Panicum virgatum Pavir.J23512 I
Pavir.J29846 Panicum virgatum Pavir.J29846 I
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I
POPTR_0002s13030 Populus trichocarpa POPTR_0002s13030 I
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I
Pm002576 Prunus mume Pm002576 I
Pm005220 Prunus mume Pm005220 I
Pm018862 Prunus mume Pm018862 I
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I
27798.m000612 Ricinus communis 27798.m000612 I
29801.m003096 Ricinus communis 29801.m003096 I
30170.m013927 Ricinus communis 30170.m013927 I
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I
Si001686m.g Setaria italica Si001686m.g I
Si017917m.g Setaria italica Si017917m.g I
Si032789m.g Setaria italica Si032789m.g I
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I
Sb02g013010 Sorghum bicolor Sb02g013010 I
Sb03g039950 Sorghum bicolor Sb03g039950 I
Sb04g005940 Sorghum bicolor Sb04g005940 I
Sb10g024950 Sorghum bicolor Sb10g024950 I
TCM_007138 Theobroma cacao TCM_007138 I
TCM_021796 Theobroma cacao TCM_021796 I
TCM_033907 Theobroma cacao TCM_033907 I
TCM_042629 Theobroma cacao TCM_042629 I
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I
Traes_7DL_1FA87027B Triticum aestivum Traes_7DL_1FA87027B I
TRIUR3_25447 Triticum urartu TRIUR3_25447 I
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I
VIT_18s0001g11170 Vitis vinifera VIT_18s0001g11170 I
GRMZM2G050550 Zea mays GRMZM2G050550 I
GRMZM2G078820 Zea mays GRMZM2G078820 I
GRMZM2G087955 Zea mays GRMZM2G087955 I
GRMZM2G145444 Zea mays GRMZM2G145444 I
GRMZM2G169316 Zea mays GRMZM2G169316 I
GRMZM5G803308 Zea mays GRMZM5G803308 I