cassava23439.valid.m1 (Manihot esculenta)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 cassava23439.valid.m1 T296862_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G12910
M07204_2.00 		Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR		 Dap-seq
OMalley et al.(2016)
AT3G12910_col_a 		0.896 0.530
NAC002
M00970_2.00 		Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN		 PBM
Lindemose et al.(2014)
ATAF1 		0.871 0.565
NAC002
M07159_2.00 		Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM		 Dap-seq
OMalley et al.(2016)
ATAF1_col_a 		0.871 0.565
NAC002
M07160_2.00 		Arabidopsis thaliana
YACGY
RCGTR		 Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a 		0.871 0.565
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava23439.valid.m1 NAC/NAM 6 134

Links

Other NAC/NAM family TFs
Other Manihot esculenta TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_11764 Aegilops tauschii F775_11764 I 0.875
Aquca_015_00469 Aquilegia coerulea Aquca_015_00469 N 0.883
Aquca_014_00255 Aquilegia coerulea Aquca_014_00255 I 0.871
fgenesh2_kg.3__1353__AT3G12910.1 Arabidopsis lyrata fgenesh2_kg.3__1353__AT3G12910.1 I 0.895
AT3G12910 Arabidopsis thaliana AT3G12910 D 0.896
NAC002 Arabidopsis thaliana AT1G01720 D 0.871
Bostr.5325s0094 Boechera stricta Bostr.5325s0094 I 0.871
Bostr.3640s0064 Boechera stricta Bostr.3640s0064 I 0.893
BRADI3G13630 Brachypodium distachyon BRADI3G13630 N 0.946
Bo9g024360 Brassica oleracea Bo9g024360 N 0.962
Bo5g001100 Brassica oleracea Bo5g001100 I 0.871
Bo3g065200 Brassica oleracea Bo3g065200 I 0.918
Bo1g138800 Brassica oleracea Bo1g138800 I 0.895
Bra034719 Brassica rapa Bra034719 I 0.891
Bra037283 Brassica rapa Bra037283 N 0.963
Bra039353 Brassica rapa Bra039353 I 0.895
Bra033239 Brassica rapa Bra033239 I 0.871
PK05686.1 Cannabis sativa PK05686.1 I 0.939
Cagra.1968s0112 Capsella grandiflora Cagra.1968s0112 I 0.871
Cagra.5641s0055 Capsella grandiflora Cagra.5641s0055 I 0.897
Carubv10009926m.g Capsella rubella Carubv10009926m.g I 0.871
Carubv10014270m.g Capsella rubella Carubv10014270m.g I 0.897
evm.TU.supercontig_320.2 Carica papaya evm.TU.supercontig_320.2 N 0.887
Ca_11128 Cicer arietinum Ca_11128 N 0.912
Cla007018 Citrullus lanatus Cla007018 N 0.982
Cla023594 Citrullus lanatus Cla023594 I 0.881
Cucsa.119310 Cucumis sativus Cucsa.119310 N 0.981
Eucgr.F01463 Eucalyptus grandis Eucgr.F01463 I 0.879
Eucgr.I01494 Eucalyptus grandis Eucgr.I01494 N 0.887
Thhalv10021225m.g Eutrema salsugineum Thhalv10021225m.g I 0.895
gene17203-v1.0-hybrid Fragaria vesca gene17203-v1.0-hybrid N 0.884
GLYMA12G02540 Glycine max GLYMA12G02540 N 0.927
GLYMA11G10230 Glycine max GLYMA11G10230 N 0.927
Gorai.008G038800 Gossypium raimondii Gorai.008G038800 N 0.890
Gorai.010G171100 Gossypium raimondii Gorai.010G171100 I 0.923
Gorai.010G236700 Gossypium raimondii Gorai.010G236700 I 0.915
MLOC_37364 Hordeum vulgare MLOC_37364 I 0.875
chr3.CM0460.350.nd Lotus japonicus chr3.CM0460.350.nd N 0.920
MDP0000868556 Malus domestica MDP0000868556 N 0.901
MDP0000480581 Malus domestica MDP0000480581 N 0.901
cassava39074.m1 Manihot esculenta cassava39074.m1 I 0.871
MTR_4g075980 Medicago truncatula MTR_4g075980 N 0.925
mgf013168m Mimulus guttatus mgf013168m N 0.874
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.897
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.886
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I 0.890
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I 0.885
Pavir.J31204 Panicum virgatum Pavir.J31204 I 0.878
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I 0.883
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I 0.904
Pavir.Cb00167 Panicum virgatum Pavir.Cb00167 I 0.888
POPTR_0005s10610 Populus trichocarpa POPTR_0005s10610 I 0.987
POPTR_0003s14950 Populus trichocarpa POPTR_0003s14950 I 0.910
Pm020961 Prunus mume Pm020961 N 0.884
PRUPE_ppa009455mg Prunus persica PRUPE_ppa009455mg N 0.884
29797.m000353 Ricinus communis 29797.m000353 N 0.893
29830.m001415 Ricinus communis 29830.m001415 N 0.930
SapurV1A.0365s0200 Salix purpurea SapurV1A.0365s0200 I 0.871
SapurV1A.0076s0070 Salix purpurea SapurV1A.0076s0070 I 0.875
SapurV1A.0059s0580 Salix purpurea SapurV1A.0059s0580 I 0.916
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I 0.872
SapurV1A.0958s0170 Salix purpurea SapurV1A.0958s0170 I 0.984
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I 0.873
Si036303m.g Setaria italica Si036303m.g I 0.894
PGSC0003DMG400039898 Solanum tuberosum PGSC0003DMG400039898 I 0.874
TCM_006499 Theobroma cacao TCM_006499 N 0.901
TCM_029321 Theobroma cacao TCM_029321 I 0.904
Traes_7DL_D05DA373C Triticum aestivum Traes_7DL_D05DA373C I 0.875
TRIUR3_29260 Triticum urartu TRIUR3_29260 I 0.875
TRIUR3_18561 Triticum urartu TRIUR3_18561 I 0.937
VIT_04s0008g00150 Vitis vinifera VIT_04s0008g00150 N 0.889
GRMZM2G052239 Zea mays GRMZM2G052239 I 0.879