ENSONIG00000008334 (Oreochromis niloticus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSONIG00000008334 T318410_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.780 0.937
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.780 0.937
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.780 0.937
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.780 0.937
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.716 0.646
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.716 0.646
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.716 0.646
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.716 0.646
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.716 0.646
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.716 0.646
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.716 0.646
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.716 0.646
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.716 0.646
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.716 0.646
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.716 0.646
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.716 0.646
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.716 0.646
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.716 0.646
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.716 0.646
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSONIP00000010480 RFX 108 186

Links

Other RFX family TFs
Other Oreochromis niloticus TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22967 Aegilops tauschii F775_22967 I
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I
LBD16 Arabidopsis thaliana AT2G42430 D
LBD20 Arabidopsis thaliana AT3G03760 I
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I
Bo8g092560 Brassica oleracea Bo8g092560 I
Bra016877 Brassica rapa Bra016877 I
Bra016876 Brassica rapa Bra016876 N
PK23185.1 Cannabis sativa PK23185.1 I
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I
Carubv10025548m.g Capsella rubella Carubv10025548m.g I
Carubv10015417m.g Capsella rubella Carubv10015417m.g I
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I
Cla006088 Citrullus lanatus Cla006088 I
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I
Cucsa.053440 Cucumis sativus Cucsa.053440 I
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I
GLYMA03G31830 Glycine max GLYMA03G31830 I
GLYMA10G04050 Glycine max GLYMA10G04050 I
GLYMA19G34590 Glycine max GLYMA19G34590 I
GLYMA19G34600 Glycine max GLYMA19G34600 I
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I
MLOC_61947 Hordeum vulgare MLOC_61947 I
LPERR02G31040 Leersia perrieri LPERR02G31040 I
LPERR03G03460 Leersia perrieri LPERR03G03460 I
LPERR08G20530 Leersia perrieri LPERR08G20530 I
Lus10033872.g Linum usitatissimum Lus10033872.g I
Lus10024877.g Linum usitatissimum Lus10024877.g I
MDP0000145761 Malus domestica MDP0000145761 I
MDP0000131964 Malus domestica MDP0000131964 I
cassava15612.m1 Manihot esculenta cassava15612.m1 I
mgf026090m Mimulus guttatus mgf026090m I
mgf020773m Mimulus guttatus mgf020773m I
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I
OB02G44330 Oryza brachyantha OB02G44330 I
OB10G12360 Oryza brachyantha OB10G12360 I
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I
BGIOSGA005344 Oryza indica BGIOSGA005344 I
OLONG_009479 Oryza longistaminata OLONG_009479 N
OMERI02G35350 Oryza meridionalis OMERI02G35350 I
ONIVA02G40360 Oryza nivara ONIVA02G40360 I
OPUNC02G34750 Oryza punctata OPUNC02G34750 I
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I
OS02G0820500 Oryza sativa OS02G0820500 I
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I
Pavir.J39638 Panicum virgatum Pavir.J39638 I
Pavir.J24246 Panicum virgatum Pavir.J24246 I
Pavir.J03376 Panicum virgatum Pavir.J03376 I
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I
Pm020629 Prunus mume Pm020629 I
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I
29883.m002035 Ricinus communis 29883.m002035 I
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I
Si015156m.g Setaria italica Si015156m.g I
Si019578m.g Setaria italica Si019578m.g I
Si037727m.g Setaria italica Si037727m.g I
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I
Sb04g037550 Sorghum bicolor Sb04g037550 I
TCM_004106 Theobroma cacao TCM_004106 I
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I
TRIUR3_01477 Triticum urartu TRIUR3_01477 I
LBD16 Vitis vinifera VIT_07s0005g03030 I
GRMZM2G092483 Zea mays GRMZM2G092483 I
GRMZM2G075499 Zea mays GRMZM2G075499 I