L798_10922 (Zootermopsis nevadensis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 L798_10922 T319590_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.800 0.800
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.708 0.708
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.708 0.708
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.708 0.708
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.708 0.708
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.708 0.708
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.708 0.708
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.708 0.708
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.708 0.708
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.708 0.708
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.708 0.708
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.708 0.708
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.708 0.708
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.708 0.708
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.708 0.708
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.708 0.708
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.708 0.708
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.700 0.700
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.700 0.700
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.700 0.700
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.700 0.700
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.700 0.700
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.700 0.700
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.700 0.700
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.700 0.700
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.700 0.700
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.700 0.700
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.700 0.700
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KDR23059 Runt 162 291

Links

Other Runt family TFs
Other Zootermopsis nevadensis TFs

274 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N
MBD10 Arabidopsis thaliana AT1G15340 N
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N
Bo8g066360 Brassica oleracea Bo8g066360 N
Bra016665 Brassica rapa Bra016665 N
Bra021136 Brassica rapa Bra021136 N
PK04144.1 Cannabis sativa PK04144.1 N
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N
Carubv10009517m.g Capsella rubella Carubv10009517m.g N
Ca_19192 Cicer arietinum Ca_19192 N
Cla016961 Citrullus lanatus Cla016961 N
Cla012920 Citrullus lanatus Cla012920 N
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N
Cucsa.096390 Cucumis sativus Cucsa.096390 N
Cucsa.132180 Cucumis sativus Cucsa.132180 N
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N
GLYMA04G23980 Glycine max GLYMA04G23980 N
GLYMA06G25310 Glycine max GLYMA06G25310 N
GLYMA15G01040 Glycine max GLYMA15G01040 N
GLYMA13G44230 Glycine max GLYMA13G44230 N
GLYMA06G30350 Glycine max GLYMA06G30350 N
GLYMA06G30590 Glycine max GLYMA06G30590 N
GLYMA04G23780 Glycine max GLYMA04G23780 N
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N
Gorai.010G062800 Gossypium raimondii Gorai.010G062800 N
Gorai.009G016600 Gossypium raimondii Gorai.009G016600 N
Lus10019406.g Linum usitatissimum Lus10019406.g N
chr4.CM0234.40.nc Lotus japonicus chr4.CM0234.40.nc N
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N
MDP0000574053 Malus domestica MDP0000574053 N
MDP0000375866 Malus domestica MDP0000375866 N
MDP0000248422 Malus domestica MDP0000248422 N
MDP0000152128 Malus domestica MDP0000152128 N
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N
MTR_4g114770 Medicago truncatula MTR_4g114770 N
MTR_4g114785 Medicago truncatula MTR_4g114785 N
MTR_0339s0020 Medicago truncatula MTR_0339s0020 N
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N
Pm027560 Prunus mume Pm027560 N
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N
SapurV1A.0034s0480 Salix purpurea SapurV1A.0034s0480 N
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N
Solyc07g008170.2 Solanum lycopersicum Solyc07g008170.2 N
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N
TCM_027169 Theobroma cacao TCM_027169 N
TCM_038107 Theobroma cacao TCM_038107 N
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N