Bra002025 (Brassica rapa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Bra002025 T319945_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.918 0.918
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra002025.1-P RWP-RK 612 660

Links

Other RWP-RK family TFs
Other Brassica rapa TFs

403 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.000
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.000
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.000
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.000
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.000
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.000
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.000
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.000
Ca_06495 Cicer arietinum Ca_06495 I 0.000
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.000
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.000
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.000
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.000
Gorai.013G155300 Gossypium raimondii Gorai.013G155300 N 0.000
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.000
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.000