CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.4395s0044
(
Capsella grandiflora
)
Sigma 70
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF04542 (Sigma70_r2)
IPR007627
Cagra.4395s0044
T324159_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.4395s0044.1.p
Sigma 70
335
405
MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRM
Links
Other
Sigma 70
family TFs
Other
Capsella grandiflora
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00011p00258380
Amborella trichopoda
AMTR_s00011p00258380
N
0.915
Aquca_013_00876
Aquilegia coerulea
Aquca_013_00876
N
0.944
SIGB
Arabidopsis lyrata
fgenesh2_kg.1__869__AT1G08540.1
N
1.000
SIGB
Arabidopsis thaliana
AT1G08540
N
1.000
Bostr.25219s0090
Boechera stricta
Bostr.25219s0090
N
1.000
Bo5g009070
Brassica oleracea
Bo5g009070
N
0.972
Bra018617
Brassica rapa
Bra018617
N
0.972
Bra030732
Brassica rapa
Bra030732
N
1.000
PK16345.1
Cannabis sativa
PK16345.1
N
0.972
Carubv10008711m.g
Capsella rubella
Carubv10008711m.g
N
1.000
evm.TU.supercontig_73.29
Carica papaya
evm.TU.supercontig_73.29
N
0.972
Ca_04693
Cicer arietinum
Ca_04693
N
0.887
Cla007091
Citrullus lanatus
Cla007091
N
0.972
Ciclev10030998m.g
Citrus clementina
Ciclev10030998m.g
N
0.958
orange1.1g007404m.g
Citrus sinensis
orange1.1g007404m.g
N
0.958
Cucsa.362600
Cucumis sativus
Cucsa.362600
N
0.958
Eucgr.D01094
Eucalyptus grandis
Eucgr.D01094
N
0.958
Thhalv10007187m.g
Eutrema salsugineum
Thhalv10007187m.g
N
1.000
gene17946-v1.0-hybrid
Fragaria vesca
gene17946-v1.0-hybrid
N
0.972
GLYMA04G00330
Glycine max
GLYMA04G00330
N
0.944
Gorai.007G347300
Gossypium raimondii
Gorai.007G347300
N
0.958
Gorai.004G253700
Gossypium raimondii
Gorai.004G253700
N
0.873
Lus10001339.g
Linum usitatissimum
Lus10001339.g
N
0.704
Lus10005668.g
Linum usitatissimum
Lus10005668.g
N
0.831
Lus10013642.g
Linum usitatissimum
Lus10013642.g
N
0.704
Lus10020325.g
Linum usitatissimum
Lus10020325.g
N
0.831
chr1.CM0017.250.nc
Lotus japonicus
chr1.CM0017.250.nc
N
0.972
MDP0000157652
Malus domestica
MDP0000157652
N
0.944
cassava14033.valid.m1
Manihot esculenta
cassava14033.valid.m1
N
0.958
MTR_3g118290
Medicago truncatula
MTR_3g118290
N
0.901
mgf015824m
Mimulus guttatus
mgf015824m
N
0.986
GSMUA_Achr7G04860_001
Musa acuminata
GSMUA_Achr7G04860_001
N
0.901
GSMUA_Achr7G17330_001
Musa acuminata
GSMUA_Achr7G17330_001
N
0.873
OPUNC11G10590
Oryza punctata
OPUNC11G10590
N
0.704
Pavir.Ia03759
Panicum virgatum
Pavir.Ia03759
N
0.700
estExt_Genewise1.C_340313
Physcomitrella patens
estExt_Genewise1.C_340313
N
0.775
estExt_fgenesh1_pg.C_280046
Physcomitrella patens
estExt_fgenesh1_pg.C_280046
N
0.704
POPTR_0019s06100
Populus trichocarpa
POPTR_0019s06100
N
0.930
POPTR_0013s06770
Populus trichocarpa
POPTR_0013s06770
N
0.930
Pm025497
Prunus mume
Pm025497
N
0.958
PRUPE_ppa006657mg
Prunus persica
PRUPE_ppa006657mg
N
0.958
30148.m001412
Ricinus communis
30148.m001412
N
0.972
SapurV1A.0671s0070
Salix purpurea
SapurV1A.0671s0070
N
0.718
SapurV1A.1189s0050
Salix purpurea
SapurV1A.1189s0050
N
0.944
SapurV1A.1953s0020
Salix purpurea
SapurV1A.1953s0020
N
0.958
Solyc01g081490.2
Solanum lycopersicum
Solyc01g081490.2
N
0.958
PGSC0003DMG400031111
Solanum tuberosum
PGSC0003DMG400031111
N
0.972
TCM_025741
Theobroma cacao
TCM_025741
N
0.972
SIGB
Vitis vinifera
VIT_15s0024g00640
N
0.958