OBART01G05540 (Oryza barthii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OBART01G05540 T331563_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OBART01G05540.1 Sox 556 624

Links

Other Sox family TFs
Other Oryza barthii TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011425 Aedes aegypti AAEL011425 I 0.431
F775_29723 Aegilops tauschii F775_29723 I 0.631
F775_28104 Aegilops tauschii F775_28104 N 0.581
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.455
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.455
BRADI2G05430 Brachypodium distachyon BRADI2G05430 N 0.435
BRADI2G33580 Brachypodium distachyon BRADI2G33580 N 0.614
A1O1_01197 Capronia coronata A1O1_01197 I 0.417
A1O3_08778 Capronia epimyces A1O3_08778 I 0.417
G647_10093 Cladophialophora carrionii G647_10093 I 0.417
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.417
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.447
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.447
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.446
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.417
PV06_04154 Exophiala oligosperma PV06_04154 I 0.417
PV11_09703 Exophiala sideris PV11_09703 I 0.417
PV08_04655 Exophiala spinifera PV08_04655 I 0.417
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.417
MLOC_27773 Hordeum vulgare MLOC_27773 I 0.621
MLOC_6673 Hordeum vulgare MLOC_6673 N 0.563
LPERR01G05200 Leersia perrieri LPERR01G05200 N 0.731
LPERR05G04880 Leersia perrieri LPERR05G04880 N 0.637
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.417
mgf024995m Mimulus guttatus mgf024995m I 0.459
OBART05G05520 Oryza barthii OBART05G05520 N 0.637
OB01G15440 Oryza brachyantha OB01G15440 N 0.735
OB05G15230 Oryza brachyantha OB05G15230 N 0.637
ORGLA05G0049600 Oryza glaberrima ORGLA05G0049600 N 0.637
ORGLA01G0051500 Oryza glaberrima ORGLA01G0051500 N 0.741
OGLUM05G05400 Oryza glumaepatula OGLUM05G05400 N 0.637
OGLUM01G06010 Oryza glumaepatula OGLUM01G06010 N 0.741
BGIOSGA002908 Oryza indica BGIOSGA002908 N 0.741
BGIOSGA019295 Oryza indica BGIOSGA019295 N 0.637
OLONG_012679 Oryza longistaminata OLONG_012679 N 0.637
OLONG_023518 Oryza longistaminata OLONG_023518 N 0.741
OMERI01G05760 Oryza meridionalis OMERI01G05760 N 0.741
OMERI05G05210 Oryza meridionalis OMERI05G05210 N 0.637
ONIVA01G06280 Oryza nivara ONIVA01G06280 N 0.741
ONIVA05G05990 Oryza nivara ONIVA05G05990 N 0.637
OPUNC02G20230 Oryza punctata OPUNC02G20230 N 0.690
OPUNC05G05150 Oryza punctata OPUNC05G05150 N 0.637
OPUNC01G05380 Oryza punctata OPUNC01G05380 N 0.690
ORUFI05G05850 Oryza rufipogon ORUFI05G05850 N 0.637
ORUFI01G05970 Oryza rufipogon ORUFI01G05970 N 0.741
SSRP1-A Oryza sativa OS01G0184900 N 0.741
SSRP1-B Oryza sativa OS05G0182600 N 0.637
Pavir.J20558 Panicum virgatum Pavir.J20558 N 0.593
Pavir.J10741 Panicum virgatum Pavir.J10741 N 0.592
Pavir.J08546 Panicum virgatum Pavir.J08546 N 0.730
Pavir.Ea00282 Panicum virgatum Pavir.Ea00282 N 0.730
Pavir.Ca01033 Panicum virgatum Pavir.Ca01033 N 0.593
AABR07009373.1 Rattus norvegicus ENSRNOG00000011429 I 0.422
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.417
SELMODRAFT_159743 Selaginella moellendorffii SELMODRAFT_159743 I 0.438
SELMODRAFT_166865 Selaginella moellendorffii SELMODRAFT_166865 I 0.438
Si024096m.g Setaria italica Si024096m.g N 0.583
Si021575m.g Setaria italica Si021575m.g N 0.593
Si000646m.g Setaria italica Si000646m.g N 0.730
Sb03g003450 Sorghum bicolor Sb03g003450 N 0.730
Sb09g005650 Sorghum bicolor Sb09g005650 N 0.599
Traes_3AS_AAAAD30B5 Triticum aestivum Traes_3AS_AAAAD30B5 N 0.581
TRAES3BF096800150CFD_g Triticum aestivum TRAES3BF096800150CFD_g N 0.581
Traes_1DS_C7F1E9F38 Triticum aestivum Traes_1DS_C7F1E9F38 I 0.631
Traes_1BS_15F9D276D Triticum aestivum Traes_1BS_15F9D276D I 0.631
Traes_1AS_3FCB35E65 Triticum aestivum Traes_1AS_3FCB35E65 I 0.631
TRIUR3_14091 Triticum urartu TRIUR3_14091 N 0.581
GRMZM2G032252 Zea mays GRMZM2G032252 N 0.730
GRMZM5G842484 Zea mays GRMZM5G842484 N 0.599