AABR07009373.1 (Rattus norvegicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSRNOG00000011429 T329034_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02819
M02490_2.00 		Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN		 PBM
Weirauch et al.(2014)
pTH9672 		0.424 0.391
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000075288 Sox 56 124

Links

Other Sox family TFs
Other Rattus norvegicus TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSOGAG00000031524 Otolemur garnettii ENSOGAG00000031524 I 0.629
HMGB2 Ochotona princeps ENSOPRG00000010124 I 0.617
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.607
ENSCAFG00000016282 Canis familiaris ENSCAFG00000016282 I 0.579
ENSTBEG00000013604 Tupaia belangeri ENSTBEG00000013604 N 0.566
ENSCJAG00000005187 Callithrix jacchus ENSCJAG00000005187 I 0.548
ENSMMUG00000031258 Macaca mulatta ENSMMUG00000031258 I 0.546
ENSOGAG00000034481 Otolemur garnettii ENSOGAG00000034481 N 0.544
ENSCJAG00000031139 Callithrix jacchus ENSCJAG00000031139 I 0.502
ENSDNOG00000035150 Dasypus novemcinctus ENSDNOG00000035150 N 0.495
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.482
GGTG_01518 Gaeumannomyces graminis GGTG_01518 I 0.457
MAPG_06737 Magnaporthe poae MAPG_06737 I 0.457
ENSGMOG00000010503 Gadus morhua ENSGMOG00000010503 N 0.452
tetur02g08250 Tetranychus urticae tetur02g08250 N 0.451
XP_002159252.1 Hydra magnipapillata XP_002159252.1 I 0.448
ENSOGAG00000034886 Otolemur garnettii ENSOGAG00000034886 N 0.446
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.443
BXY_1081900 Bursaphelenchus xylophilus BXY_1081900 I 0.439
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.437
M408DRAFT_333748 Serendipita vermifera M408DRAFT_333748 N 0.436
M408DRAFT_332518 Serendipita vermifera M408DRAFT_332518 N 0.436
SNAPOd2T00005164001 Oikopleura dioica SNAPOd2T00005164001 N 0.434
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.434
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.433
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.433
ENSDNOG00000037677 Dasypus novemcinctus ENSDNOG00000037677 N 0.431
hmg-1.1 Caenorhabditis elegans WBGene00001971 N 0.430
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I 0.430
GLOTRDRAFT_119701 Gloeophyllum trabeum GLOTRDRAFT_119701 N 0.430
CJA04355 Caenorhabditis japonica CJA04355 N 0.428
ACEP19638 Atta cephalotes ACEP19638 I 0.428
CRE11852 Caenorhabditis remanei CRE11852 N 0.428
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.427
PPA14042 Pristionchus pacificus PPA14042 N 0.427
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.427
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.424
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.424
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.424
NCU02819 Neurospora crassa NCU02819 D 0.424
PPA02261 Pristionchus pacificus PPA02261 N 0.423
HDID_0000239001 Hymenolepis diminuta HDID_0000239001 N 0.423
scaffold164-EXSNAP2012.19 Pristionchus exspectatus scaffold164-EXSNAP2012.19 N 0.423
Pavir.J08546 Panicum virgatum Pavir.J08546 N 0.422
Sb03g003450 Sorghum bicolor Sb03g003450 N 0.422
Si000646m.g Setaria italica Si000646m.g N 0.422
Pavir.Ea00282 Panicum virgatum Pavir.Ea00282 N 0.422
ONIVA01G06280 Oryza nivara ONIVA01G06280 N 0.422
OGLUM01G06010 Oryza glumaepatula OGLUM01G06010 N 0.422
OMERI01G05760 Oryza meridionalis OMERI01G05760 N 0.422
OBART01G05540 Oryza barthii OBART01G05540 N 0.422
OB01G15440 Oryza brachyantha OB01G15440 N 0.422
GRMZM2G032252 Zea mays GRMZM2G032252 N 0.422
LPERR01G05200 Leersia perrieri LPERR01G05200 N 0.422
OPUNC01G05380 Oryza punctata OPUNC01G05380 N 0.422
OLONG_023518 Oryza longistaminata OLONG_023518 N 0.422
BGIOSGA002908 Oryza indica BGIOSGA002908 N 0.422
SSRP1-A Oryza sativa OS01G0184900 N 0.422
PHACADRAFT_250106 Phanerochaete carnosa PHACADRAFT_250106 N 0.422
ORGLA01G0051500 Oryza glaberrima ORGLA01G0051500 N 0.422
ORUFI01G05970 Oryza rufipogon ORUFI01G05970 N 0.422
OPUNC02G20230 Oryza punctata OPUNC02G20230 N 0.422
ENSMMUG00000010106 Macaca mulatta ENSMMUG00000010106 I 0.421
ASIM_0001178701 Anisakis simplex ASIM_0001178701 N 0.420
nOo.2.0.1.g04693 Onchocerca ochengi nOo.2.0.1.g04693 N 0.418
Bm8632 Brugia malayi Bm8632 N 0.418
nDi.2.2.2.g08508 Dirofilaria immitis nDi.2.2.2.g08508 N 0.418
nLs.2.1.2.g04082 Litomosoides sigmodontis nLs.2.1.2.g04082 N 0.418
nAv.1.0.1.g08227 Acanthocheilonema viteae nAv.1.0.1.g08227 N 0.418
LOAG_08062 Loa loa LOAG_08062 N 0.418
WBGene00238628 Onchocerca volvulus WBGene00238628 N 0.418
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.418
PILCRDRAFT_819051 Piloderma croceum PILCRDRAFT_819051 N 0.417
ENSCAFG00000032639 Canis familiaris ENSCAFG00000032639 N 0.417
ETH_00031100 Eimeria tenella ETH_00031100 I 0.417
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.416
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.416
V499_08602 Pseudogymnoascus pannorum V499_08602 I 0.415
GMDG_05273 Pseudogymnoascus destructans GMDG_05273 I 0.415
e_gwh2.2.1019.1 Phanerochaete chrysosporium e_gwh2.2.1019.1 N 0.415
FOMPIDRAFT_1116461 Fomitopsis pinicola FOMPIDRAFT_1116461 N 0.415